Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0339
         (535 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1...    27   2.3  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   2.3  
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    26   3.1  
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.1  
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc...    25   7.1  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    25   9.4  

>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 387 ICPRLYWRGHLIVFTISSLMQIIYI*FY 470
           I  +L++RG +IV  I +L+  +YI FY
Sbjct: 582 IFSKLFFRGWIIVIIIWTLIAALYITFY 609


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 25/63 (39%), Positives = 29/63 (46%)
 Frame = +1

Query: 22  P*AMRSKIPRRPPSVWIAST*APALRFRAWLLPPHLGPAGSKPVTLLGLPPACRPALPTT 201
           P A  S  P  PPS+ + +  AP L   A + PP   PAG        LPPA  PA P  
Sbjct: 425 PSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPL--PAGMPAAP--PLPPAA-PAPPPA 479

Query: 202 CAP 210
            AP
Sbjct: 480 PAP 482



 Score = 25.4 bits (53), Expect = 5.4
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
 Frame = +1

Query: 118 PPHLGPA-GSKPVTL-----LGLPPACRPALPTTCAPKLKPI 225
           PP   P+ G +P  L     +  PPA  PA+P   AP L P+
Sbjct: 365 PPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPL 406



 Score = 24.6 bits (51), Expect = 9.4
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = +1

Query: 88  PALRFRAWLLPPHLGPAG---SKPV-TLLGLPPACRPALPTTCAPKL 216
           PA+  R+    P LG A    + PV T   LPP+  P+LP +  P L
Sbjct: 393 PAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSL 439


>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = +3

Query: 99  VQGLVVTTPPGPSRIQTGNPVGSATSLSSSVTDNVRAQAEANQVDSTPIAASL 257
           V G   TTP       + + + S  SLSS+ TDN+ A      V  T +AAS+
Sbjct: 146 VYGDSATTPAASEAQASSDILSSLASLSSASTDNLAA-----SVTPTTVAASV 193


>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +3

Query: 120 TPPGPSRIQTGNPVGSATSLSSSVTDNVRAQAEANQVDSTPIAAS 254
           TP   S   + +   S+T +SSS+T ++ + A ++ V S+  ++S
Sbjct: 148 TPSSSSTTSSSSSSSSSTPISSSITSSISSSA-SSSVSSSSASSS 191


>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
           Prp43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = +3

Query: 93  VTVQGLVVTTPPGPSRIQTGNPVGSATSLSSSVTDNVRAQAEANQVDST 239
           +T+ G+V    PG S+ +  NP     SL  S      AQ  A +   T
Sbjct: 365 LTIDGIVYVVDPGFSKQKIYNPRIRVESLLVSPISKASAQQRAGRAGRT 413


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 8/50 (16%)
 Frame = +3

Query: 129 GPSRIQTGN--PVGSATSLSSS------VTDNVRAQAEANQVDSTPIAAS 254
           GPSR  T +  PVG++ S+  +      + D  +A+A   +  S P+A S
Sbjct: 297 GPSRFPTNSNVPVGNSMSIRDTDSPLNILVDKAKAKASIKENASQPVAPS 346


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,238,488
Number of Sequences: 5004
Number of extensions: 44493
Number of successful extensions: 122
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)