Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0339
(535 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0288 + 2151552-2151581,2151818-2151893,2152019-2153460 30 0.073
01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863... 33 0.11
08_02_1570 + 27931057-27931367,27931486-27931550,27931763-279318... 29 1.8
01_01_0570 - 4231100-4232560 29 1.8
05_01_0373 + 2922604-2922921 29 2.4
01_06_0993 + 33647301-33647618 29 2.4
07_03_0558 + 19461369-19462448 29 3.1
07_01_0395 + 2985513-2986018,2986227-2986268,2986494-2986521 29 3.1
04_04_1125 + 31085106-31085714 29 3.1
09_06_0081 + 20745627-20748144,20748211-20748308 28 4.1
06_01_1023 - 7996240-7996369,7997166-7997260,7997430-7997515,799... 28 4.1
07_01_0862 - 7172083-7172931 28 5.4
02_01_0286 + 1921049-1921726 28 5.4
07_01_0479 + 3606663-3607448 27 9.5
06_03_0078 + 16291254-16291532,16291654-16291725 27 9.5
06_01_0850 - 6472213-6473541,6474229-6474282,6474616-6474671,647... 27 9.5
>11_01_0288 + 2151552-2151581,2151818-2151893,2152019-2153460
Length = 515
Score = 29.9 bits (64), Expect(2) = 0.073
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -3
Query: 194 GNAGRQAGGRPNRVTGLDPAGPRWGGNNQALNRNAG 87
G G+ GG+PN G P GGN+ A + G
Sbjct: 302 GGGGKNGGGQPNNAKG-GGGAPNGGGNHPAQGKKGG 336
Score = 23.0 bits (47), Expect(2) = 0.073
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -3
Query: 254 GGGNWGRVHLIGFSLGAHVVGNAGRQAGG 168
G GN G+ G + + GNA AGG
Sbjct: 262 GAGNGGKKGGGGNEIPVQIKGNANNAAGG 290
>01_03_0117 +
12684729-12685886,12685978-12686145,12686292-12686336,
12686438-12687280
Length = 737
Score = 33.5 bits (73), Expect = 0.11
Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Frame = +1
Query: 46 PRRPPSVWIAST*APALRFRAWLLPPHLGPAGSKP----VTLLGLPPACRPALPTTCAP 210
P +PP ++ AP R RA P L P P +PPA RPALP T AP
Sbjct: 110 PVKPPEE-LSPVGAPRSRVRAMPPSPSLSPPAKAPSHSHAKTPSMPPAERPALPPTKAP 167
Score = 28.3 bits (60), Expect = 4.1
Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Frame = +1
Query: 16 KSP*AMRSKIPRRPPSVWIA--ST*APALRFRAWLLPPHLGPAGSKPVTLLGLPPACRPA 189
K+P +K P PP+ A T APA A PP L PA + PP+ PA
Sbjct: 141 KAPSHSHAKTPSMPPAERPALPPTKAPAAISPA--TPPQLSPANAHSTHHHAKPPSLPPA 198
Query: 190 LPTTCAP 210
P +P
Sbjct: 199 EPPVPSP 205
>08_02_1570 +
27931057-27931367,27931486-27931550,27931763-27931841,
27931992-27932010,27932091-27932210,27932557-27932626,
27932709-27932752,27932918-27932959,27933033-27933092,
27933413-27933470,27934718-27935376
Length = 508
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -1
Query: 253 EAAIGVEST*LASAWARTLSVTLDDRLVADPTGLPV 146
+AA+ + + W+R SV++D +V DP L V
Sbjct: 459 DAAVKIAGEAAVALWSRRFSVSIDSHIVVDPVFLDV 494
>01_01_0570 - 4231100-4232560
Length = 486
Score = 29.5 bits (63), Expect = 1.8
Identities = 20/47 (42%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = -3
Query: 254 GGGNWGRVHLIGFSLGAHVVGNAGRQ-AGGRPNRVTGLDPAGPRWGG 117
GGG G GF G V GN GR GG+ N + G D A GG
Sbjct: 278 GGGGGGMGGGGGFGGGGGVGGNTGRDFDGGKGNGLNGGDGASGGIGG 324
>05_01_0373 + 2922604-2922921
Length = 105
Score = 29.1 bits (62), Expect = 2.4
Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Frame = -3
Query: 254 GGGNWGRVHLIGFSLGAHVVGNA--GRQAGGRPNRVTG---LDPAGPRW 123
GGG WG +G LG G GR+ G R +G L PA W
Sbjct: 22 GGGGWGGAAALGAWLGGTEAGGGAWGREGGRLRRRPSGRRRLRPASATW 70
>01_06_0993 + 33647301-33647618
Length = 105
Score = 29.1 bits (62), Expect = 2.4
Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Frame = -3
Query: 254 GGGNWGRVHLIGFSLGAHVVGNA--GRQAGGRPNRVTG---LDPAGPRW 123
GGG WG +G LG G GR+ G R +G L PA W
Sbjct: 22 GGGGWGGAAALGAWLGGTEAGGGAWGREGGRLRRRPSGRRRLRPASATW 70
>07_03_0558 + 19461369-19462448
Length = 359
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/29 (51%), Positives = 15/29 (51%)
Frame = -3
Query: 254 GGGNWGRVHLIGFSLGAHVVGNAGRQAGG 168
GGG G H GF GA V G AG GG
Sbjct: 319 GGGGLGGGHGGGFGAGAGVGGGAGGGVGG 347
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/29 (51%), Positives = 15/29 (51%)
Frame = -3
Query: 254 GGGNWGRVHLIGFSLGAHVVGNAGRQAGG 168
GGG G H GF GA V G AG GG
Sbjct: 283 GGGGLGGGHGSGFGGGAGVGGGAGGGVGG 311
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/29 (51%), Positives = 15/29 (51%)
Frame = -3
Query: 254 GGGNWGRVHLIGFSLGAHVVGNAGRQAGG 168
GGG G H GF GA V G AG GG
Sbjct: 179 GGGGLGGGHGGGFGGGAGVGGGAGGGVGG 207
>07_01_0395 + 2985513-2986018,2986227-2986268,2986494-2986521
Length = 191
Score = 28.7 bits (61), Expect = 3.1
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Frame = -3
Query: 194 GNAGRQAGGRPNRVT----GLDPAGPRWGGNNQALNRNAGAYVEAIHTDGGLLGIFDRIA 27
G+ R+ GG + V G+DPAG GG+ + R G+ A T LL I +A
Sbjct: 69 GSVARELGGVGSVVGFVGGGVDPAGCARGGHPRTARRRPGSGAAAAAT-RPLLPILPMLA 127
Query: 26 HGD 18
GD
Sbjct: 128 RGD 130
>04_04_1125 + 31085106-31085714
Length = 202
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/50 (36%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Frame = +1
Query: 91 ALRFRAWLLPPHLGPAGSKPVTLLGLPPACR--PALPTTCAPKLKPIKWT 234
AL A L P GS T PP C+ P PT P P WT
Sbjct: 15 ALALSAQLAPAAATWCGSNCPTTKPPPPPCQPPPPTPTPATPTTPPTPWT 64
>09_06_0081 + 20745627-20748144,20748211-20748308
Length = 871
Score = 28.3 bits (60), Expect = 4.1
Identities = 21/61 (34%), Positives = 26/61 (42%)
Frame = +1
Query: 28 AMRSKIPRRPPSVWIAST*APALRFRAWLLPPHLGPAGSKPVTLLGLPPACRPALPTTCA 207
A S R P+ +A P LR L PP P T + +PPA P +PT A
Sbjct: 155 ASSSSAMPRAPTASLALRAPPHLRAPCGLAPPV--PTPPALATHVPMPPAPAPPVPTPPA 212
Query: 208 P 210
P
Sbjct: 213 P 213
>06_01_1023 -
7996240-7996369,7997166-7997260,7997430-7997515,
7998034-7998184
Length = 153
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = -3
Query: 179 QAGGRPNRVTGLDPAGPRWGGNNQALNRNAGAYV 78
+AG R R G DP P WGG + G V
Sbjct: 8 EAGRRRRRGGGSDPPSPMWGGGRRRAVSRRGKLV 41
>07_01_0862 - 7172083-7172931
Length = 282
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +1
Query: 112 LLPPHLGPAGSKPVTLLGLPPACRPAL-PTTCAPKLKPI 225
L PP L P + L LPP +P L P PK KP+
Sbjct: 145 LFPPPLPPRKKAMLFPLPLPPRKKPLLYPPPLPPKKKPL 183
>02_01_0286 + 1921049-1921726
Length = 225
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Frame = -3
Query: 245 NWGR-VHLIGFS--LGAHVVGNAGRQAGGRPNRVTGLDPAGP 129
N GR H IG L GN G G RP +VTG+ A P
Sbjct: 182 NGGRGFHFIGEGRDLATGGAGNGGGNGGRRPRKVTGIVAAVP 223
>07_01_0479 + 3606663-3607448
Length = 261
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 118 PPHLGPAGSKPVTLLGLPPACRPALP 195
PP +GP +P G PP RP +P
Sbjct: 212 PPPMGPPQVRPGMPGGPPPGMRPGMP 237
>06_03_0078 + 16291254-16291532,16291654-16291725
Length = 116
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 49 RRPPSVWIAST*APALRFRAWLLPPHLGPAGSK 147
RR +V ++ST RF AW PP G A S+
Sbjct: 35 RRHAAVALSSTTTTTTRFAAWSPPPPSGGARSR 67
>06_01_0850 -
6472213-6473541,6474229-6474282,6474616-6474671,
6474824-6476012
Length = 875
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 94 LRFRAWLLPPHLGPAGSKPVTLLGLPPACRPALPTTCAP 210
++FR +L L PA +P+ + LPP L +T AP
Sbjct: 2 IQFRRRILTLLLQPASPRPIAGIFLPPCSLRRLLSTTAP 40
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,898,095
Number of Sequences: 37544
Number of extensions: 377415
Number of successful extensions: 1218
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1216
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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