Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0339
         (535 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26408| Best HMM Match : Lipase (HMM E-Value=0)                      57   8e-09
SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)              56   2e-08
SB_43441| Best HMM Match : Lipase (HMM E-Value=8.19998e-41)            55   3e-08
SB_7713| Best HMM Match : Lipase (HMM E-Value=0.0064)                  42   4e-04
SB_37850| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.59 
SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.59 
SB_58542| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.78 
SB_22961| Best HMM Match : Abhydrolase_1 (HMM E-Value=0.043)           31   0.78 
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_43904| Best HMM Match : Lipase (HMM E-Value=5e-07)                  29   3.2  
SB_40390| Best HMM Match : BON (HMM E-Value=0.68)                      29   3.2  
SB_15833| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_35182| Best HMM Match : CUB (HMM E-Value=0)                         29   3.2  
SB_57096| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_22619| Best HMM Match : TSP_1 (HMM E-Value=8.5e-14)                 28   5.5  
SB_3802| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.5  
SB_5209| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.3  
SB_28381| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_23753| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_26408| Best HMM Match : Lipase (HMM E-Value=0)
          Length = 714

 Score = 57.2 bits (132), Expect = 8e-09
 Identities = 33/80 (41%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
 Frame = -3

Query: 233 VHLIGFSLGAHVVGNAGR---QAGGRPNRVTGLDPAGPRWGGNNQ--ALNRNAGAYVEAI 69
           VH+IGFS GAHV G  GR   + G   +R+T LDPA   +  +++   L+ +   +V+ I
Sbjct: 191 VHVIGFSFGAHVAGYVGRRMKKRGRMIDRITALDPAAMWFHKHHEDVRLDTSDALFVDVI 250

Query: 68  HTDGGLLGIFDRIAHGDFYP 9
           HT     GI   I H DFYP
Sbjct: 251 HTSAD-YGITSTIGHADFYP 269


>SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 940

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 32/79 (40%), Positives = 45/79 (56%), Gaps = 5/79 (6%)
 Frame = -3

Query: 230 HLIGFSLGAHVVGNAGR---QAGGRPNRVTGLDPAGPRW--GGNNQALNRNAGAYVEAIH 66
           +L+GFSLGAH+ G  GR   + G + NR+TGLDPA   +     +  L+ +   +V+ +H
Sbjct: 690 YLVGFSLGAHISGYVGRRIAKTGQKLNRITGLDPASIHFVNAHVDVRLDPSDADFVDVMH 749

Query: 65  TDGGLLGIFDRIAHGDFYP 9
           TD  L G      H DFYP
Sbjct: 750 TDMDLAGTPTVSGHIDFYP 768


>SB_43441| Best HMM Match : Lipase (HMM E-Value=8.19998e-41)
          Length = 291

 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 35/87 (40%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
 Frame = -3

Query: 254 GGGNWGRVHLIGFSLGAHVVGNAG---RQAGGRPNRVTGLDPAGPRWGGN--NQALNRNA 90
           G    G  H IGFSLGAH+ G  G   ++ G   +R+TGLDPA   + G   +  L+R  
Sbjct: 166 GSREGGAFHSIGFSLGAHISGYVGQRLKRIGRHLDRITGLDPATLMFKGEAPDVRLDRLD 225

Query: 89  GAYVEAIHTDGGLLGIFDRIAHGDFYP 9
             +V+ IHT   + GI     H DFYP
Sbjct: 226 AQFVDVIHT-SYVFGITAPHGHMDFYP 251


>SB_7713| Best HMM Match : Lipase (HMM E-Value=0.0064)
          Length = 131

 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 18/29 (62%), Positives = 21/29 (72%)
 Frame = -3

Query: 236 RVHLIGFSLGAHVVGNAGRQAGGRPNRVT 150
           RVHLIG SLGAHV G AG +  G+  R+T
Sbjct: 102 RVHLIGHSLGAHVAGYAGERLSGKVGRIT 130


>SB_37850| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 509

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
 Frame = +3

Query: 30  NAVKNTEK-TTVGVDCLHISSCVTVQGLVVTTPPGPSRIQTGNPVGSATSLSSSVTDNVR 206
           NA  N++  TTV           T      T  P  + + TG P+G+ T + + +     
Sbjct: 43  NATTNSQNITTVAPITTMAPDTTTAAPFTTTIAPATTALPTGTPIGTPTGIPTGILTGTA 102

Query: 207 AQAEANQVDSTPIAASLL 260
           +QA  +    TP  A+++
Sbjct: 103 SQATPS---GTPTGAAVV 117


>SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +1

Query: 115 LPPHLGPAGSKPVTLLGLPPACRPALPTTCAPKLKP 222
           LPP + P    P     +PP C P  P  C+  L P
Sbjct: 753 LPPKVTPKPPAPPQFAPVPPPCAPIPPMPCSAPLPP 788


>SB_58542| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 268

 Score = 30.7 bits (66), Expect = 0.78
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -3

Query: 251 GGNWGRVHLIGFSLGAHVVGNAGRQAGGRPNRVTGLDPAG 132
           G N  + HL G S+G H+VG    Q   R   V  + PAG
Sbjct: 128 GVNKRKFHLAGISMGGHIVGVYAAQHPARVASVIMMCPAG 167


>SB_22961| Best HMM Match : Abhydrolase_1 (HMM E-Value=0.043)
          Length = 183

 Score = 30.7 bits (66), Expect = 0.78
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -3

Query: 251 GGNWGRVHLIGFSLGAHVVGNAGRQAGGRPNRVTGLDPAG 132
           G N  + HL G S+G H+VG    Q   R   V  + PAG
Sbjct: 6   GVNKRKFHLAGISMGGHIVGVYAAQHPARVASVIMMCPAG 45


>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2834

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = +1

Query: 85   APALRFRAWLLPPHLGPAGSKPVTLLGLPPACRPALPTTCAPKLKPIKWT 234
            A +  FRA  + P   PA S P+     PP  + ALP   AP + P + T
Sbjct: 1762 ASSASFRAQTVAPITQPALSSPLVAQSAPPNSQAALPV--APVIPPAQST 1809


>SB_43904| Best HMM Match : Lipase (HMM E-Value=5e-07)
          Length = 408

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = -3

Query: 146 LDPAGPRWGGNNQ--ALNRNAGAYVEAIHTDGGLLGIFDRIAHGDFYP 9
           LDPAG  +   +    L+ +   +V+ +HTD    G   +  H DFYP
Sbjct: 2   LDPAGLYFVNEHVDVRLDPSDAEFVDVMHTDMDFAGTSTQSGHIDFYP 49


>SB_40390| Best HMM Match : BON (HMM E-Value=0.68)
          Length = 561

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
 Frame = +1

Query: 121 PHLGPAGSKPVTLLGLPPACRPALPTTC-APKLKP 222
           P  GP+   P T L   P  RP  PT C  P  +P
Sbjct: 106 PCYGPSAKPPATALVPNPLLRPQCPTPCYGPSAQP 140


>SB_15833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 775

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
 Frame = +1

Query: 121 PHLGPAGSKPVTLLGLPPACRPALPTTC-APKLKP 222
           P  GP+   P T L   P  RP  PT C  P  +P
Sbjct: 436 PCFGPSAPPPATALVPNPLLRPQCPTPCYGPSAQP 470


>SB_35182| Best HMM Match : CUB (HMM E-Value=0)
          Length = 963

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 324 PTVPDRTAIPTLLKIIFFLFFSTRRRQLGSSPL 226
           PT+P RT   T  K  +F F++  R   GSSP+
Sbjct: 464 PTLPPRTTPGTDWKYAYFTFYARGRWCSGSSPI 496


>SB_57096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 442

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +1

Query: 49  RRPPSVWIAST*APALRFRAWLLPPHLGPAGSKPVTLLGLPPACRPA--LPTTCAP 210
           RR PS W+ S   P+ R  +  LP    P+G  P     LP    P+  LP+ C P
Sbjct: 203 RRLPSGWLPSRRLPSRRLPSGRLPSRRLPSGRLPSG--RLPSRWLPSRRLPSGCLP 256


>SB_22619| Best HMM Match : TSP_1 (HMM E-Value=8.5e-14)
          Length = 506

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = -3

Query: 203 HVVGNAGRQAGGRPNRVTGLDPAG--PRWGGNNQALNRNA 90
           H  GNAG Q   R   V+   P G  P     +QA NRNA
Sbjct: 106 HQCGNAGTQTRTRTKTVSEACPGGRCPYHFSESQACNRNA 145


>SB_3802| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 257

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/59 (23%), Positives = 30/59 (50%)
 Frame = -2

Query: 390 KLTVRKINIIIKCSFRMIAVSPPTVPDRTAIPTLLKIIFFLFFSTRRRQLGSSPLDWLQ 214
           K+ ++++N++ KCS      +P   P     P     +F LF+  + ++  SS L+ ++
Sbjct: 150 KVDIQQMNLMYKCSGGGEGPNPSPPPSGAPPPPPPPPLFLLFYVEKSKRAESSALEGIE 208


>SB_5209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 67

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 15/28 (53%), Positives = 16/28 (57%)
 Frame = -3

Query: 227 LIGFSLGAHVVGNAGRQAGGRPNRVTGL 144
           +IGFSLG HV G     AG R    TGL
Sbjct: 21  VIGFSLGGHVAG----YAGSRIKNTTGL 44


>SB_28381| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 193

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -3

Query: 200 VVGNAGRQAG-GRPNRVTGLDPAGPRWGGNNQALNRNA 90
           +  N G +AG G P  V G+D        +NQ LN+NA
Sbjct: 9   ISANIGTKAGTGPPLEVDGIDKLDEMTFDSNQLLNKNA 46


>SB_23753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 517

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = +3

Query: 72  CLHISSCVTVQGLVVTTPPGPSRIQTGNPVGSATSLSSSVTDNVRAQAEAN--QVDSTPI 245
           CL +      QG  +TT    S + T   V + T+ SSS+  N  + + +   Q  STPI
Sbjct: 347 CLRLELYTCKQGAAITTSTTASSVAT--TVTTTTATSSSMLPNTPSSSPSTGTQPSSTPI 404


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,229,812
Number of Sequences: 59808
Number of extensions: 370132
Number of successful extensions: 1030
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)