Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0339
         (535 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29535-3|AAK31458.1|  556|Caenorhabditis elegans Hypothetical pr...    31   0.69 
Z70783-11|CAA94860.2|  782|Caenorhabditis elegans Hypothetical p...    30   0.91 
Z81544-7|CAB04432.2|  551|Caenorhabditis elegans Hypothetical pr...    30   1.2  
L14730-1|AAB37563.2|  351|Caenorhabditis elegans Hypothetical pr...    29   1.6  
AL023844-6|CAA19532.1|  551|Caenorhabditis elegans Hypothetical ...    29   1.6  
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ...    29   2.1  
Z81560-2|CAB04547.1| 1021|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AL031269-2|CAA20332.1|  299|Caenorhabditis elegans Hypothetical ...    29   2.8  
Z70755-1|CAA94781.2|  292|Caenorhabditis elegans Hypothetical pr...    28   3.7  
AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical...    28   4.8  
Z78066-2|CAB01524.2|  257|Caenorhabditis elegans Hypothetical pr...    27   6.4  

>U29535-3|AAK31458.1|  556|Caenorhabditis elegans Hypothetical
           protein C25H3.6a protein.
          Length = 556

 Score = 30.7 bits (66), Expect = 0.69
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +3

Query: 102 QGLVVTTPPGPSRIQTGNPVGSATSLSSSVTDNVRAQAEANQVDSTPIAASLL 260
           +G+   TP G     TG P GS   L S    +   +++ +  +STP+AAS++
Sbjct: 113 RGITPNTPAGRRVTSTGLP-GSQQRLVSPANGSYAPRSQVSPGESTPVAASVV 164


>Z70783-11|CAA94860.2|  782|Caenorhabditis elegans Hypothetical
           protein ZK856.12 protein.
          Length = 782

 Score = 30.3 bits (65), Expect = 0.91
 Identities = 19/78 (24%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
 Frame = +3

Query: 30  NAVKNTEKTTVGVD-CLH-ISSCVTVQGLVVTTPPGPSR-IQTGNPVGSATSLSSSVTDN 200
           N V ++  T+  +D C +  +S    +   +  PP   + + + + +GS+  +S+S+ ++
Sbjct: 334 NPVASSHPTSSSMDDCPYGRASIARAKDYQLRLPPHSQKGLSSSSLLGSSYPVSNSIKND 393

Query: 201 VRAQAEANQVDSTPIAAS 254
           +  Q+E+N+ D+T I+ S
Sbjct: 394 ITKQSESNRADATNISFS 411


>Z81544-7|CAB04432.2|  551|Caenorhabditis elegans Hypothetical
           protein F49C5.3 protein.
          Length = 551

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = +2

Query: 20  HHEQCGQ--KYREDHRRCGLPPHKLLRYGSG 106
           HH + GQ  K+RE H+R    P +++R+ +G
Sbjct: 502 HHLKWGQVRKFREQHQRMETSPEEMIRFATG 532


>L14730-1|AAB37563.2|  351|Caenorhabditis elegans Hypothetical
           protein C13G5.2 protein.
          Length = 351

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 146 LDPAGPRWGGNNQALNRNAGAYV-EAIHTDGGLLGIFDR 33
           L+P+G  + G   AL+RNA  YV   +     +L IFD+
Sbjct: 100 LEPSGHGFRGGIAALSRNASHYVISTVGRSSNILNIFDK 138


>AL023844-6|CAA19532.1|  551|Caenorhabditis elegans Hypothetical
           protein Y48A6B.8 protein.
          Length = 551

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = +2

Query: 20  HHEQCGQ--KYREDHRRCGLPPHKLLRYGSG 106
           HH + GQ  K+RE H+R    P +++R+ +G
Sbjct: 502 HHLKWGQVRKFREQHQRMETSPEEVIRFATG 532


>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
           protein Y8A9A.2 protein.
          Length = 1360

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 18/73 (24%), Positives = 29/73 (39%)
 Frame = +3

Query: 21  TMSNAVKNTEKTTVGVDCLHISSCVTVQGLVVTTPPGPSRIQTGNPVGSATSLSSSVTDN 200
           T + A   TE T+   D     S  T +    +T        T +   S T  +S+ TD+
Sbjct: 191 TTTTATSTTESTSTSTDSTTTES--TTESTTESTSTSTDSTTTESTTESTTESTSTSTDS 248

Query: 201 VRAQAEANQVDST 239
              ++ +   DST
Sbjct: 249 TTTESTSTSTDST 261


>Z81560-2|CAB04547.1| 1021|Caenorhabditis elegans Hypothetical
           protein K02E2.2 protein.
          Length = 1021

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 300 IPTLLKIIFFLFFSTRRRQLGSSPLDWL 217
           +PT     F   F   +RQ+G+SPL WL
Sbjct: 543 LPTHFSSPFTYAFGRMKRQIGTSPLPWL 570


>AL031269-2|CAA20332.1|  299|Caenorhabditis elegans Hypothetical
           protein VW02B12L.3 protein.
          Length = 299

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
 Frame = +1

Query: 115 LPPHLGPAGSKPVT-----LLGLPPACRPALPTTCAPKLK 219
           LP   G  GS+PV      +   PP  RPA P   AP +K
Sbjct: 136 LPALKGSTGSRPVAAPARPVAAAPPKPRPAAPAVAAPAVK 175


>Z70755-1|CAA94781.2|  292|Caenorhabditis elegans Hypothetical
           protein K06A4.1 protein.
          Length = 292

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 381 VRKINIIIKCSFRMIAVSPPTVPDRTAIPT 292
           +R IN + KC+ R+++  P T+P  +   T
Sbjct: 239 IRNINTLYKCNNRVVSKFPSTIPSTSTTTT 268


>AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical
           protein Y43F8C.20 protein.
          Length = 193

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 17/46 (36%), Positives = 20/46 (43%)
 Frame = -3

Query: 254 GGGNWGRVHLIGFSLGAHVVGNAGRQAGGRPNRVTGLDPAGPRWGG 117
           GGGNWG         G +  G  GR  GGR +     +  G  WGG
Sbjct: 74  GGGNWGGNGGGRGDWGGN--GGGGRGGGGRGDWGGNNNGGGGNWGG 117


>Z78066-2|CAB01524.2|  257|Caenorhabditis elegans Hypothetical
           protein W06A7.4 protein.
          Length = 257

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 9/34 (26%), Positives = 21/34 (61%)
 Frame = -2

Query: 372 INIIIKCSFRMIAVSPPTVPDRTAIPTLLKIIFF 271
           +++II  ++  +    P++P +  IP++L  +FF
Sbjct: 151 VSVIIFIAYCFVRKGKPSIPPKIVIPSMLSGVFF 184


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,740,626
Number of Sequences: 27780
Number of extensions: 275050
Number of successful extensions: 738
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)