Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0339
         (535 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g66150.1 68414.m07508 leucine-rich repeat protein kinase, put...    31   0.48 
At5g11690.1 68418.m01366 mitochondrial import inner membrane tra...    30   1.1  
At2g43680.2 68415.m05430 calmodulin-binding family protein simil...    28   3.4  
At2g43680.1 68415.m05429 calmodulin-binding family protein simil...    28   3.4  
At2g01570.1 68415.m00081 gibberellin response modulator (RGA1) /...    28   4.5  
At3g51340.1 68416.m05620 aspartyl protease family protein contai...    27   7.9  

>At1g66150.1 68414.m07508 leucine-rich repeat protein kinase,
           putative (TMK1) identical to protein kinase TMK1
           gi|166888|gb|AAA32876, SP|P43298 Putative receptor
           protein kinase TMK1 precursor (EC 2.7.1.-) {Arabidopsis
           thaliana}
          Length = 942

 Score = 31.1 bits (67), Expect = 0.48
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = -1

Query: 343 NDSGLAPDCTGPDCNPNTSKNHFFFVFFNKEAAIGVEST*LASAWARTLSVTLDDRLVAD 164
           N SG  P   GPD  P  S  H  F     E  + +  + + S W     +T D  ++ +
Sbjct: 171 NVSGSLPGFLGPDEFPGLSILHLAFNNLEGELPMSLAGSQVQSLWLNGQKLTGDITVLQN 230

Query: 163 PTGL-PVWI 140
            TGL  VW+
Sbjct: 231 MTGLKEVWL 239


>At5g11690.1 68418.m01366 mitochondrial import inner membrane
           translocase subunit Tim17, putative similar to SP|Q9SP35
           Mitochondrial import inner membrane translocase subunit
           TIM17 {Arabidopsis thaliana}; contains Pfam profile
           PF02466: Mitochondrial import inner membrane translocase
           subunit Tim17
          Length = 133

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = -3

Query: 233 VHLIGFSLGAHVVGNAGRQ-AGGRPNRVTGLDPAGPRWGGNNQALNRNAGAYVEAIHTDG 57
           V+ IG++ GA  VG +      G  N      P G R+ G  QA + NA          G
Sbjct: 16  VNAIGYAFGAGAVGGSVYHFVRGAYN-----SPIGARYVGGTQAASMNAPRLGGTFAVFG 70

Query: 56  GLLGIFD 36
           GLL  FD
Sbjct: 71  GLLSTFD 77


>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 669

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +1

Query: 55  PPSVWIAST*APALRFRAWLLP-PH-LGPAGSKPVTLLGLPPACRPALPTTCAPK 213
           PP++  AST  P+ R     +P P    P G+ P  +   PP+ R   PT   P+
Sbjct: 175 PPTLRPASTRVPSQRITPHSVPSPRPSSPRGASPQAISSKPPSPRAEPPTLDTPR 229


>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 668

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +1

Query: 55  PPSVWIAST*APALRFRAWLLP-PH-LGPAGSKPVTLLGLPPACRPALPTTCAPK 213
           PP++  AST  P+ R     +P P    P G+ P  +   PP+ R   PT   P+
Sbjct: 174 PPTLRPASTRVPSQRITPHSVPSPRPSSPRGASPQAISSKPPSPRAEPPTLDTPR 228


>At2g01570.1 68415.m00081 gibberellin response modulator (RGA1) /
           gibberellin-responsive modulator identical to GB:Y11336,
           member of SCARECROW family
          Length = 587

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
 Frame = -3

Query: 236 RVHLIGFSLGAHVVGNAGRQA-----GGRPN-RVTGLDPAGPRWGGNNQALNRNAGAYVE 75
           RVH+I FS+   +   A  QA     GG P  R+TG+ P  P    +   +        E
Sbjct: 322 RVHVIDFSMNQGLQWPALMQALALREGGPPTFRLTGIGPPAPDNSDHLHEVGCKLAQLAE 381

Query: 74  AIHTD 60
           AIH +
Sbjct: 382 AIHVE 386


>At3g51340.1 68416.m05620 aspartyl protease family protein contains
           Eukaryotic and viral aspartyl proteases active site,
           PROSITE:PS00141
          Length = 518

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 6/74 (8%)
 Frame = +3

Query: 84  SSCVTVQGLVVTTPPGPS------RIQTGNPVGSATSLSSSVTDNVRAQAEANQVDSTPI 245
           S+C   + L   +PP P        + T  P  SAT  +    ++ R        + +P+
Sbjct: 445 SNCFEDESLASESPPPPEIEAPPPSVSTPPPAASATPPTIDPRNSTRNSGTGGAANLSPL 504

Query: 246 AASLLXXXXXXXFL 287
           AA LL       FL
Sbjct: 505 AAQLLFLLPLLAFL 518


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,118,216
Number of Sequences: 28952
Number of extensions: 264006
Number of successful extensions: 735
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)