Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0337
         (560 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY819656-1|AAV70656.1|   56|Tribolium castaneum elongation facto...    50   1e-08
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    23   1.4  
AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory recept...    22   3.1  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    22   4.1  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    22   4.1  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    21   7.2  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   9.6  

>AY819656-1|AAV70656.1|   56|Tribolium castaneum elongation factor
           1-alpha protein.
          Length = 56

 Score = 50.4 bits (115), Expect = 1e-08
 Identities = 23/25 (92%), Positives = 24/25 (96%)
 Frame = +2

Query: 257 TGVLKPGTIVVFAPANITTEVKSVE 331
           TGVLKPG +VVFAPANITTEVKSVE
Sbjct: 20  TGVLKPGMVVVFAPANITTEVKSVE 44



 Score = 41.5 bits (93), Expect = 5e-06
 Identities = 18/19 (94%), Positives = 19/19 (100%)
 Frame = +3

Query: 201 LQDVYKIGGIGTVPVGRVK 257
           LQDVYKIGGIGTVPVGRV+
Sbjct: 1   LQDVYKIGGIGTVPVGRVE 19



 Score = 25.8 bits (54), Expect = 0.25
 Identities = 10/11 (90%), Positives = 10/11 (90%)
 Frame = +1

Query: 334 HHEALQEAVPG 366
           HHEAL EAVPG
Sbjct: 46  HHEALPEAVPG 56


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
 Frame = -1

Query: 275 LVSTHQFNS----ADGHGTNTTDFVYVLQ 201
           L   H++NS    A+GHG NT+   Y  Q
Sbjct: 275 LAYQHEYNSFNWTANGHGHNTSSHNYYAQ 303


>AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory receptor
           candidate 21 protein.
          Length = 386

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 278 YLVSTHQFNSADGHGTNTTDF 216
           YLV   QFN++D    N+T+F
Sbjct: 359 YLVILIQFNNSDFVQRNSTEF 379


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = -3

Query: 549 WQCGNPRLVCNRLSLT 502
           WQC      C R+S T
Sbjct: 32  WQCNTDEETCTRISST 47


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 340 RGALHRLYFSSDVGGGKDNNGT 275
           R    ++  ++ V GG +NNGT
Sbjct: 173 RSKYKKMMKAAQVSGGNNNNGT 194


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +1

Query: 304 HHY*SKVCGEHHE 342
           HH    V G HHE
Sbjct: 15  HHQSGSVAGHHHE 27


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 10/30 (33%), Positives = 11/30 (36%)
 Frame = +1

Query: 154 PSCHLPAPLTSPCVFPCKTYTKSVVLVPCP 243
           PS   P P   P  F C  Y     + P P
Sbjct: 155 PSIIDPGPALPPAGFLCNNYLPLPQVPPLP 184


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,010
Number of Sequences: 336
Number of extensions: 3426
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13786212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)