Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0337
(560 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 101 3e-22
SB_48623| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_47538| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_24811| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_33161| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_19057| Best HMM Match : ADH_zinc_N (HMM E-Value=5.9e-13) 27 7.9
SB_11980| Best HMM Match : dCMP_cyt_deam (HMM E-Value=1.2e-22) 27 7.9
SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1) 27 7.9
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 101 bits (243), Expect = 3e-22
Identities = 44/58 (75%), Positives = 51/58 (87%)
Frame = +1
Query: 334 HHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQ 507
HHE+L EA+PGDNVGFNVKNVSVK+++RG VAGD KNNPPK FTAQVIV+NHPG+
Sbjct: 154 HHESLAEALPGDNVGFNVKNVSVKDIKRGNVAGDFKNNPPKPCKSFTAQVIVMNHPGE 211
Score = 99.5 bits (237), Expect = 2e-21
Identities = 47/75 (62%), Positives = 56/75 (74%), Gaps = 6/75 (8%)
Frame = +3
Query: 51 NMLEPSTKMPWFKGWQVER------KEGKADGKCLIEALDAILPPARPTDKPLRLPLQDV 212
NM+ +++MPWFK W +ER KE A G L E LD+ILPP+RP+ PLRLPLQDV
Sbjct: 53 NMITGTSQMPWFKQWTIERVDPATKKEANASGVTLFEGLDSILPPSRPSGLPLRLPLQDV 112
Query: 213 YKIGGIGTVPVGRVK 257
YKIGGIGTVPVGRV+
Sbjct: 113 YKIGGIGTVPVGRVE 127
Score = 48.8 bits (111), Expect = 3e-06
Identities = 21/25 (84%), Positives = 24/25 (96%)
Frame = +2
Query: 257 TGVLKPGTIVVFAPANITTEVKSVE 331
TGVLKPGT+V F+P+NITTEVKSVE
Sbjct: 128 TGVLKPGTVVTFSPSNITTEVKSVE 152
Score = 28.7 bits (61), Expect = 3.4
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +3
Query: 516 GYTPVLDCHTA 548
GY+PVLDCHTA
Sbjct: 215 GYSPVLDCHTA 225
>SB_48623| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 369
Score = 29.5 bits (63), Expect = 2.0
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 3/88 (3%)
Frame = +1
Query: 28 PFLDGTETTCWSLQPKCLGSRDGRWSVRKAKLTENASLKLSMPSCHLPAPLTSPCVFPCK 207
PF+ T T SL+ + R + L ++ S+ P P S +PC
Sbjct: 243 PFVRITHATFASLKLHRIVKLSLRECIHTCGLQKHTSIHTLAPVG--PRQDASTVYYPCS 300
Query: 208 TYTKSVVLVPCPSAELNWC---VETRYH 282
+ T + V PC SA + C + TR H
Sbjct: 301 STTMTTVYYPCSSATMVSCFVNIRTRQH 328
Score = 27.9 bits (59), Expect = 6.0
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Frame = +1
Query: 43 TETTCWSLQPKCLGSRDGRWSVRKAKLTENASLKLSMPSCHLPAPLTSPCVFPCKTYTKS 222
T +T SL+ + + R + K L ++ S+ P P S +PC + T +
Sbjct: 7 THSTFASLKLRRIVKLSLRVCIHKCGLQKHTSIHTLAPVG--PRRDASTVYYPCSSATMT 64
Query: 223 VVLVPCPSAELNWCV-ETRYHCCLCPRQHHY 312
V PC SA ++ +R+ RQ +Y
Sbjct: 65 TVYYPCSSATMDSSAWNSRFASVKLHRQKNY 95
>SB_47538| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 503
Score = 28.7 bits (61), Expect = 3.4
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Frame = +1
Query: 82 GSRDGRWSVRKAKLTENASLKLSMPSCHLPAPLTSPCVFPC----KTYTKSVVLVPCPSA 249
G + +KA+ T +A L CH A L+ VFP S V PC SA
Sbjct: 395 GGSENHKIYQKAEFTMSAMPFLKRKFCHGNAKLSCSGVFPFLEVGPRRDASTVYYPCSSA 454
Query: 250 ELNWC---VETRYH 282
++ C + TR H
Sbjct: 455 TMDSCFVLIRTRQH 468
>SB_24811| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 619
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/53 (26%), Positives = 22/53 (41%)
Frame = +1
Query: 148 SMPSCHLPAPLTSPCVFPCKTYTKSVVLVPCPSAELNWCVETRYHCCLCPRQH 306
S+ C+ P C+ Y S + C SA +++C+ H CL H
Sbjct: 551 SLSVCYCPLLSVRYCLSVTVHYCLSATVHYCLSATVHYCLSVTVHYCLSVTVH 603
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = +1
Query: 175 PLTSPCVFPCKT--YTKSVVLVPCPSAELNWCVETRYHCCLCPRQHH 309
P S C P + Y SV + C SA +++C+ H CL H+
Sbjct: 550 PSLSVCYCPLLSVRYCLSVTVHYCLSATVHYCLSATVHYCLSVTVHY 596
Score = 27.5 bits (58), Expect = 7.9
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +1
Query: 220 SVVLVPCPSAELNWCVETRYHCCLCPRQHH 309
SV + C S +++C+ HCCL H+
Sbjct: 351 SVTVHYCLSVTVHYCLSVTVHCCLSVTVHY 380
Score = 27.5 bits (58), Expect = 7.9
Identities = 10/40 (25%), Positives = 18/40 (45%)
Frame = +1
Query: 190 CVFPCKTYTKSVVLVPCPSAELNWCVETRYHCCLCPRQHH 309
C+ Y S + C S +++C+ HCC+ H+
Sbjct: 573 CLSATVHYCLSATVHYCLSVTVHYCLSVTVHCCMSVTVHY 612
>SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 476
Score = 28.3 bits (60), Expect = 4.5
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = +3
Query: 39 WHGDNMLEPSTKMPWFKGWQVERKE 113
+H DN + PWF+ W +++E
Sbjct: 191 YHNDNKTHSTQTGPWFRAWSNQKRE 215
>SB_33161| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 78
Score = 27.9 bits (59), Expect = 6.0
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -3
Query: 549 WQCGNPRLVCNRLSLTR 499
W NP + CNRLS TR
Sbjct: 39 WHYSNPTIKCNRLSFTR 55
>SB_19057| Best HMM Match : ADH_zinc_N (HMM E-Value=5.9e-13)
Length = 303
Score = 27.5 bits (58), Expect = 7.9
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +1
Query: 199 PCKT--YTKSVVLVPCPSAELNWCVETRYHCCLCPRQHH 309
PC+T Y K C A++N+C YH LC R +H
Sbjct: 86 PCRTCSYCKKGRYNLC--AKMNFCATPPYHGSLCRRYNH 122
>SB_11980| Best HMM Match : dCMP_cyt_deam (HMM E-Value=1.2e-22)
Length = 432
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = -3
Query: 540 GNP--RLVCNRLSLTRMVKHNDLSCKICSTLRWVVFGVT 430
GNP R C+++ V + LSCK+ LRW V+G T
Sbjct: 210 GNPDSRSSCSQMERLNKVMRDALSCKMEVFLRW-VWGAT 247
>SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2077
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = -1
Query: 272 VSTHQFNSADGHGTNTTDFVYVLQ--GKTQGLVSGAGR 165
+ H F A GHG + V Q G ++GLVS R
Sbjct: 367 IQLHAFGDASGHGVCAAVYAVVAQASGVSRGLVSAKSR 404
>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
Length = 305
Score = 27.5 bits (58), Expect = 7.9
Identities = 20/64 (31%), Positives = 27/64 (42%)
Frame = -1
Query: 206 LQGKTQGLVSGAGRWQDGIESFNEAFSVSFAFLTLHLPSLEPRHFG*RLQHVVSVPSRNG 27
L G G+V G G ES ++F + + L EP G L+H + V R
Sbjct: 227 LTGIKSGVVGGGG------ESLMDSFLLGHQLKKVDLKPKEPEDGGGTLKHAMEVRYRAM 280
Query: 26 HESD 15
H SD
Sbjct: 281 HSSD 284
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,017,678
Number of Sequences: 59808
Number of extensions: 482477
Number of successful extensions: 1559
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1552
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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