Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0337
(560 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 161 2e-40
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 161 2e-40
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 161 2e-40
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 53 1e-07
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 50 1e-06
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 50 1e-06
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 34 0.061
AC024746-12|AAF60401.1| 142|Caenorhabditis elegans Hypothetical... 29 3.0
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 28 4.0
U58744-2|AAL65789.1| 95|Caenorhabditis elegans Hypothetical pr... 28 4.0
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 28 4.0
U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore co... 28 5.3
U46668-4|AAA93348.3| 951|Caenorhabditis elegans Nematode astaci... 27 7.0
Z81061-7|CAB02939.2| 819|Caenorhabditis elegans Hypothetical pr... 27 9.2
Z78413-11|CAB01667.2| 819|Caenorhabditis elegans Hypothetical p... 27 9.2
Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical pr... 27 9.2
U97403-8|AAB52470.1| 720|Caenorhabditis elegans Hypothetical pr... 27 9.2
U61948-1|AAB03144.2| 1432|Caenorhabditis elegans Hypothetical pr... 27 9.2
M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein ( C.ele... 27 9.2
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 161 bits (392), Expect = 2e-40
Identities = 89/183 (48%), Positives = 105/183 (57%), Gaps = 1/183 (0%)
Frame = +3
Query: 3 NPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTD 182
NP AV FVPISG++GDNMLE S+ MPWFKGW VERKEG A GK L+EALD+I+PP RPTD
Sbjct: 150 NPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSIIPPQRPTD 209
Query: 183 KPLRLPLQDVYKIGGIGTVPVGRVKL-VC*NQVXXXXXXXXXXXXXXXXWRAPRSSPRSC 359
+PLRLPLQDVYKIGGIGTVPVGRV+ + + S P +
Sbjct: 210 RPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAV 269
Query: 360 TWRQCRFQRKERVRQGIASWLCCW*LQKQPT*GCCRFYSSSHCA*PSWSNSNGYTPVLDC 539
F K + I C ++ P F++ SNGYTPVLDC
Sbjct: 270 PGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDC 329
Query: 540 HTA 548
HTA
Sbjct: 330 HTA 332
Score = 94.3 bits (224), Expect = 5e-20
Identities = 42/58 (72%), Positives = 48/58 (82%)
Frame = +1
Query: 334 HHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQ 507
HHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P K A F AQVI++NHPGQ
Sbjct: 261 HHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQ 318
Score = 45.2 bits (102), Expect = 3e-05
Identities = 18/25 (72%), Positives = 22/25 (88%)
Frame = +2
Query: 257 TGVLKPGTIVVFAPANITTEVKSVE 331
TG++KPG +V FAP N+TTEVKSVE
Sbjct: 235 TGIIKPGMVVTFAPQNVTTEVKSVE 259
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 161 bits (392), Expect = 2e-40
Identities = 89/183 (48%), Positives = 105/183 (57%), Gaps = 1/183 (0%)
Frame = +3
Query: 3 NPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTD 182
NP AV FVPISG++GDNMLE S+ MPWFKGW VERKEG A GK L+EALD+I+PP RPTD
Sbjct: 184 NPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSIIPPQRPTD 243
Query: 183 KPLRLPLQDVYKIGGIGTVPVGRVKL-VC*NQVXXXXXXXXXXXXXXXXWRAPRSSPRSC 359
+PLRLPLQDVYKIGGIGTVPVGRV+ + + S P +
Sbjct: 244 RPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAV 303
Query: 360 TWRQCRFQRKERVRQGIASWLCCW*LQKQPT*GCCRFYSSSHCA*PSWSNSNGYTPVLDC 539
F K + I C ++ P F++ SNGYTPVLDC
Sbjct: 304 PGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDC 363
Query: 540 HTA 548
HTA
Sbjct: 364 HTA 366
Score = 94.3 bits (224), Expect = 5e-20
Identities = 42/58 (72%), Positives = 48/58 (82%)
Frame = +1
Query: 334 HHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQ 507
HHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P K A F AQVI++NHPGQ
Sbjct: 295 HHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQ 352
Score = 45.2 bits (102), Expect = 3e-05
Identities = 18/25 (72%), Positives = 22/25 (88%)
Frame = +2
Query: 257 TGVLKPGTIVVFAPANITTEVKSVE 331
TG++KPG +V FAP N+TTEVKSVE
Sbjct: 269 TGIIKPGMVVTFAPQNVTTEVKSVE 293
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 161 bits (392), Expect = 2e-40
Identities = 89/183 (48%), Positives = 105/183 (57%), Gaps = 1/183 (0%)
Frame = +3
Query: 3 NPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTD 182
NP AV FVPISG++GDNMLE S+ MPWFKGW VERKEG A GK L+EALD+I+PP RPTD
Sbjct: 184 NPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSIIPPQRPTD 243
Query: 183 KPLRLPLQDVYKIGGIGTVPVGRVKL-VC*NQVXXXXXXXXXXXXXXXXWRAPRSSPRSC 359
+PLRLPLQDVYKIGGIGTVPVGRV+ + + S P +
Sbjct: 244 RPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAV 303
Query: 360 TWRQCRFQRKERVRQGIASWLCCW*LQKQPT*GCCRFYSSSHCA*PSWSNSNGYTPVLDC 539
F K + I C ++ P F++ SNGYTPVLDC
Sbjct: 304 PGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDC 363
Query: 540 HTA 548
HTA
Sbjct: 364 HTA 366
Score = 94.3 bits (224), Expect = 5e-20
Identities = 42/58 (72%), Positives = 48/58 (82%)
Frame = +1
Query: 334 HHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQ 507
HHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P K A F AQVI++NHPGQ
Sbjct: 295 HHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQ 352
Score = 45.2 bits (102), Expect = 3e-05
Identities = 18/25 (72%), Positives = 22/25 (88%)
Frame = +2
Query: 257 TGVLKPGTIVVFAPANITTEVKSVE 331
TG++KPG +V FAP N+TTEVKSVE
Sbjct: 269 TGIIKPGMVVTFAPQNVTTEVKSVE 293
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 53.2 bits (122), Expect = 1e-07
Identities = 31/70 (44%), Positives = 35/70 (50%)
Frame = +1
Query: 37 DGTETTCWSLQPKCLGSRDGRWSVRKAKLTENASLKLSMPSCHLPAPLTSPCVFPCKTYT 216
D TETTC C GSRDG + RK L E S +L PS H A LT VF + T
Sbjct: 178 DSTETTCLRSPRTCHGSRDGLLNARKETLPERPSSRLLTPSSHHNAQLTDHSVFHSRMCT 237
Query: 217 KSVVLVPCPS 246
+S L P S
Sbjct: 238 RSEELEPSQS 247
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 50.0 bits (114), Expect = 1e-06
Identities = 25/79 (31%), Positives = 45/79 (56%)
Frame = +3
Query: 21 FVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLP 200
FVP+SG+ G+N+++ ++ W+ DG CL+E +D+ + P P+D PLR+
Sbjct: 350 FVPVSGFTGENLIK-RMELDWY------------DGPCLLELIDSFVAPQPPSDGPLRIG 396
Query: 201 LQDVYKIGGIGTVPVGRVK 257
+ DV K+ V G+++
Sbjct: 397 ISDVLKVASNQLVVSGKIE 415
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 50.0 bits (114), Expect = 1e-06
Identities = 25/79 (31%), Positives = 45/79 (56%)
Frame = +3
Query: 21 FVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLP 200
FVP+SG+ G+N+++ ++ W+ DG CL+E +D+ + P P+D PLR+
Sbjct: 368 FVPVSGFTGENLIK-RMELDWY------------DGPCLLELIDSFVAPQPPSDGPLRIG 414
Query: 201 LQDVYKIGGIGTVPVGRVK 257
+ DV K+ V G+++
Sbjct: 415 ISDVLKVASNQLVVSGKIE 433
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 34.3 bits (75), Expect = 0.061
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +1
Query: 349 QEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNH 498
+ V GDN+ F +K + EL+ G++ S ++ K F A+V+VL H
Sbjct: 392 ERVVAGDNIKFKLKGIEENELQGGFII-CSPDSLAKTGRVFDAEVLVLEH 440
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 126 GKCLIEALDAILPP-ARPTDKPLRLPLQDVYKIGGIGTVPVGRVKLVC 266
G C IE +D +LP R + P+R + + Y +GTV +G+++ C
Sbjct: 318 GPCFIEFIDVLLPSYKRDFNGPVRCTVAEKY--SEMGTVIIGKMESGC 363
>AC024746-12|AAF60401.1| 142|Caenorhabditis elegans Hypothetical
protein Y110A2AL.1 protein.
Length = 142
Score = 28.7 bits (61), Expect = 3.0
Identities = 20/65 (30%), Positives = 29/65 (44%)
Frame = +1
Query: 328 GEHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQ 507
GE A++ + V +N+ V RR Y D P+GA DF AQ++ PG
Sbjct: 40 GEKRTAVENVINAKVVAWNLAVVR----RRHYF--DLHGMTPQGAVDFVAQIVEGRRPGY 93
Query: 508 TQTVT 522
+ T
Sbjct: 94 IKLET 98
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 28.3 bits (60), Expect = 4.0
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +3
Query: 78 PWFKGWQVERKEGKADGKC---LIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVG 248
P +G + EG+ D C LI+ALD++ P R +P+ I G GTV VG
Sbjct: 201 PVIRGSALSALEGQ-DISCIERLIDALDSLPEPDRNEKDTFVMPIASKTAITGRGTVIVG 259
Query: 249 RVK 257
++
Sbjct: 260 TLE 262
>U58744-2|AAL65789.1| 95|Caenorhabditis elegans Hypothetical
protein F55F1.1 protein.
Length = 95
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -2
Query: 367 LQVQLLGELRGALHRLYFSSDVGG-GKDNNGTWFQH 263
+Q++ ELR +H + + DVGG K N+ W QH
Sbjct: 42 IQLESSAELRKYIHHEFLTMDVGGLIKYNHLEWVQH 77
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 28.3 bits (60), Expect = 4.0
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +3
Query: 78 PWFKGWQVERKEGKADGKC---LIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVG 248
P +G + EG+ D C LI+ALD++ P R +P+ I G GTV VG
Sbjct: 201 PVIRGSALSALEGQ-DISCIERLIDALDSLPEPDRNEKDTFVMPIASKTAITGRGTVIVG 259
Query: 249 RVK 257
++
Sbjct: 260 TLE 262
>U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore
complex protein protein11 protein.
Length = 805
Score = 27.9 bits (59), Expect = 5.3
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = -1
Query: 482 T*AVKSAAPLGGLFLESPAT*PRRNSLTDTFFTLKPTLSPGTAS 351
T A +AAP GGLF + T P T F T +P TA+
Sbjct: 468 TTAPAAAAPTGGLFGAATTTAPATVGPTGGLFGAATTTTPATAA 511
>U46668-4|AAA93348.3| 951|Caenorhabditis elegans Nematode astacin
protease protein39 protein.
Length = 951
Score = 27.5 bits (58), Expect = 7.0
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +1
Query: 319 KVCGEHHEALQEAVPGDNVGFNVKNVSVKELRRGYVA 429
K+CGE+HEAL P + V + S E R G+ A
Sbjct: 608 KLCGEYHEALLFTTPRNRVRIEFSSDSSVE-RDGFFA 643
>Z81061-7|CAB02939.2| 819|Caenorhabditis elegans Hypothetical
protein T01C3.10 protein.
Length = 819
Score = 27.1 bits (57), Expect = 9.2
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +1
Query: 439 KNNPPKGAAD-FTAQVIVLNHP 501
K NPP+GAAD F +V+ L+ P
Sbjct: 279 KANPPQGAADKFHVKVVTLHEP 300
>Z78413-11|CAB01667.2| 819|Caenorhabditis elegans Hypothetical
protein T01C3.10 protein.
Length = 819
Score = 27.1 bits (57), Expect = 9.2
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +1
Query: 439 KNNPPKGAAD-FTAQVIVLNHP 501
K NPP+GAAD F +V+ L+ P
Sbjct: 279 KANPPQGAADKFHVKVVTLHEP 300
>Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical protein
R107.8 protein.
Length = 1429
Score = 27.1 bits (57), Expect = 9.2
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -2
Query: 301 GGGKDNNGTWFQHTSLTLPTGTVPIPPI-LYTSCRG 197
G G D G F HT+L +PT P PI L+T G
Sbjct: 998 GNGNDFLGD-FNHTNLQIPTEPEPESPIKLHTEAAG 1032
>U97403-8|AAB52470.1| 720|Caenorhabditis elegans Hypothetical
protein T10E9.2 protein.
Length = 720
Score = 27.1 bits (57), Expect = 9.2
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +1
Query: 268 ETRYHCCLCPRQH 306
E ++ CCLCPR H
Sbjct: 346 EFKWRCCLCPRAH 358
>U61948-1|AAB03144.2| 1432|Caenorhabditis elegans Hypothetical protein
C46A5.4 protein.
Length = 1432
Score = 27.1 bits (57), Expect = 9.2
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 349 QEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKG 459
+EA+P N + ++V RR +VAGD ++N G
Sbjct: 983 KEALPQGNQERDCRSVLQNRQRRCFVAGDERSNEQPG 1019
>M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein ( C.elegans
homeotic lin-12 protein gene, complete cds. ).
Length = 1429
Score = 27.1 bits (57), Expect = 9.2
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -2
Query: 301 GGGKDNNGTWFQHTSLTLPTGTVPIPPI-LYTSCRG 197
G G D G F HT+L +PT P PI L+T G
Sbjct: 998 GNGNDFLGD-FNHTNLQIPTEPEPESPIKLHTEAAG 1032
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,011,994
Number of Sequences: 27780
Number of extensions: 337487
Number of successful extensions: 1023
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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