BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= mg--0337 (560 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 103 1e-22 At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 103 1e-22 At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 103 1e-22 At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 103 1e-22 At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 44 7e-05 At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 39 0.002 At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 38 0.006 At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 34 0.075 At1g35550.1 68414.m04414 elongation factor Tu C-terminal domain-... 31 0.40 At2g46830.1 68415.m05843 myb-related transcription factor (CCA1)... 31 0.70 At4g01910.1 68417.m00251 DC1 domain-containing protein contains ... 30 1.2 At4g32180.1 68417.m04580 eukaryotic pantothenate kinase family p... 29 2.1 At3g05990.1 68416.m00684 leucine-rich repeat family protein cont... 29 2.1 At1g47840.1 68414.m05325 hexokinase, putative similar to hexokin... 29 2.8 At5g19490.1 68418.m02322 repressor protein-related similar to re... 28 4.9 At1g18900.2 68414.m02353 pentatricopeptide (PPR) repeat-containi... 28 4.9 At1g18900.1 68414.m02352 pentatricopeptide (PPR) repeat-containi... 28 4.9 At5g10140.1 68418.m01174 MADS-box protein flowering locus F (FLF... 27 6.5 At1g01060.2 68414.m00007 myb family transcription factor contain... 27 6.5 At1g01060.1 68414.m00006 myb family transcription factor contain... 27 6.5 At2g42410.1 68415.m05249 zinc finger (C2H2 type) family protein ... 27 8.6 >At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha identical to SWISS-PROT:P13905 elongation factor 1-alpha (EF-1-alpha) [Arabidopsis thaliana] Length = 449 Score = 103 bits (246), Expect = 1e-22 Identities = 52/85 (61%), Positives = 60/85 (70%) Frame = +3 Query: 3 NPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTD 182 NP + FVPISG+ GDNM+E ST + W+KG L+EALD I P RP+D Sbjct: 184 NPDKIPFVPISGFEGDNMIERSTNLDWYKG------------PTLLEALDQINEPKRPSD 231 Query: 183 KPLRLPLQDVYKIGGIGTVPVGRVK 257 KPLRLPLQDVYKIGGIGTVPVGRV+ Sbjct: 232 KPLRLPLQDVYKIGGIGTVPVGRVE 256 Score = 102 bits (244), Expect = 2e-22 Identities = 43/58 (74%), Positives = 55/58 (94%) Frame = +1 Query: 334 HHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQ 507 HHE+L EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P KGAA+FT+QVI++NHPGQ Sbjct: 283 HHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQVIIMNHPGQ 340 Score = 41.9 bits (94), Expect = 3e-04 Identities = 17/25 (68%), Positives = 21/25 (84%) Frame = +2 Query: 257 TGVLKPGTIVVFAPANITTEVKSVE 331 TG++KPG +V FAP +TTEVKSVE Sbjct: 257 TGMIKPGMVVTFAPTGLTTEVKSVE 281 Score = 29.5 bits (63), Expect = 1.6 Identities = 10/12 (83%), Positives = 11/12 (91%) Frame = +3 Query: 513 NGYTPVLDCHTA 548 NGY PVLDCHT+ Sbjct: 343 NGYAPVLDCHTS 354 >At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha identical to GB:CAA34456 from [Arabidopsis thaliana] (Plant Mol. Biol. 14 (1), 107-110 (1990)) Length = 449 Score = 103 bits (246), Expect = 1e-22 Identities = 52/85 (61%), Positives = 60/85 (70%) Frame = +3 Query: 3 NPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTD 182 NP + FVPISG+ GDNM+E ST + W+KG L+EALD I P RP+D Sbjct: 184 NPDKIPFVPISGFEGDNMIERSTNLDWYKG------------PTLLEALDQINEPKRPSD 231 Query: 183 KPLRLPLQDVYKIGGIGTVPVGRVK 257 KPLRLPLQDVYKIGGIGTVPVGRV+ Sbjct: 232 KPLRLPLQDVYKIGGIGTVPVGRVE 256 Score = 102 bits (244), Expect = 2e-22 Identities = 43/58 (74%), Positives = 55/58 (94%) Frame = +1 Query: 334 HHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQ 507 HHE+L EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P KGAA+FT+QVI++NHPGQ Sbjct: 283 HHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQVIIMNHPGQ 340 Score = 41.9 bits (94), Expect = 3e-04 Identities = 17/25 (68%), Positives = 21/25 (84%) Frame = +2 Query: 257 TGVLKPGTIVVFAPANITTEVKSVE 331 TG++KPG +V FAP +TTEVKSVE Sbjct: 257 TGMIKPGMVVTFAPTGLTTEVKSVE 281 Score = 29.5 bits (63), Expect = 1.6 Identities = 10/12 (83%), Positives = 11/12 (91%) Frame = +3 Query: 513 NGYTPVLDCHTA 548 NGY PVLDCHT+ Sbjct: 343 NGYAPVLDCHTS 354 >At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha identical to GB:CAA34456 from [Arabidopsis thaliana] (Plant Mol. Biol. 14 (1), 107-110 (1990)) Length = 449 Score = 103 bits (246), Expect = 1e-22 Identities = 52/85 (61%), Positives = 60/85 (70%) Frame = +3 Query: 3 NPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTD 182 NP + FVPISG+ GDNM+E ST + W+KG L+EALD I P RP+D Sbjct: 184 NPDKIPFVPISGFEGDNMIERSTNLDWYKG------------PTLLEALDQINEPKRPSD 231 Query: 183 KPLRLPLQDVYKIGGIGTVPVGRVK 257 KPLRLPLQDVYKIGGIGTVPVGRV+ Sbjct: 232 KPLRLPLQDVYKIGGIGTVPVGRVE 256 Score = 102 bits (244), Expect = 2e-22 Identities = 43/58 (74%), Positives = 55/58 (94%) Frame = +1 Query: 334 HHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQ 507 HHE+L EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P KGAA+FT+QVI++NHPGQ Sbjct: 283 HHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQVIIMNHPGQ 340 Score = 41.9 bits (94), Expect = 3e-04 Identities = 17/25 (68%), Positives = 21/25 (84%) Frame = +2 Query: 257 TGVLKPGTIVVFAPANITTEVKSVE 331 TG++KPG +V FAP +TTEVKSVE Sbjct: 257 TGMIKPGMVVTFAPTGLTTEVKSVE 281 Score = 29.5 bits (63), Expect = 1.6 Identities = 10/12 (83%), Positives = 11/12 (91%) Frame = +3 Query: 513 NGYTPVLDCHTA 548 NGY PVLDCHT+ Sbjct: 343 NGYAPVLDCHTS 354 >At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha identical to GB:CAA34456 from [Arabidopsis thaliana] (Plant Mol. Biol. 14 (1), 107-110 (1990)) Length = 449 Score = 103 bits (246), Expect = 1e-22 Identities = 52/85 (61%), Positives = 60/85 (70%) Frame = +3 Query: 3 NPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTD 182 NP + FVPISG+ GDNM+E ST + W+KG L+EALD I P RP+D Sbjct: 184 NPDKIPFVPISGFEGDNMIERSTNLDWYKG------------PTLLEALDQINEPKRPSD 231 Query: 183 KPLRLPLQDVYKIGGIGTVPVGRVK 257 KPLRLPLQDVYKIGGIGTVPVGRV+ Sbjct: 232 KPLRLPLQDVYKIGGIGTVPVGRVE 256 Score = 102 bits (244), Expect = 2e-22 Identities = 43/58 (74%), Positives = 55/58 (94%) Frame = +1 Query: 334 HHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQ 507 HHE+L EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P KGAA+FT+QVI++NHPGQ Sbjct: 283 HHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQVIIMNHPGQ 340 Score = 41.9 bits (94), Expect = 3e-04 Identities = 17/25 (68%), Positives = 21/25 (84%) Frame = +2 Query: 257 TGVLKPGTIVVFAPANITTEVKSVE 331 TG++KPG +V FAP +TTEVKSVE Sbjct: 257 TGMIKPGMVVTFAPTGLTTEVKSVE 281 Score = 29.5 bits (63), Expect = 1.6 Identities = 10/12 (83%), Positives = 11/12 (91%) Frame = +3 Query: 513 NGYTPVLDCHTA 548 NGY PVLDCHT+ Sbjct: 343 NGYAPVLDCHTS 354 >At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu, putative similar to mitochondrial elongation factor Tu [Arabidopsis thaliana] gi|1149571|emb|CAA61511 Length = 454 Score = 44.0 bits (99), Expect = 7e-05 Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%) Frame = +3 Query: 135 LIEALDAILP-PARPTDKPLRLPLQDVYKIGGIGTVPVGRVK 257 L++A+D +P P R DKP +P++DV+ I G GTV GR++ Sbjct: 249 LMDAVDEYIPDPVRVLDKPFLMPIEDVFSIQGRGTVATGRIE 290 >At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) identical to SWISS-PROT:P17745 elongation factor Tu, chloroplast precursor (EF-Tu) [Arabidopsis thaliana] Length = 476 Score = 39.1 bits (87), Expect = 0.002 Identities = 19/42 (45%), Positives = 28/42 (66%), Gaps = 1/42 (2%) Frame = +3 Query: 135 LIEALDAILP-PARPTDKPLRLPLQDVYKIGGIGTVPVGRVK 257 L++A+D +P P R T+ P L ++DV+ I G GTV GRV+ Sbjct: 269 LMDAVDDYIPIPQRQTELPFLLAVEDVFSITGRGTVATGRVE 310 Score = 28.3 bits (60), Expect = 3.7 Identities = 11/27 (40%), Positives = 18/27 (66%) Frame = +1 Query: 346 LQEAVPGDNVGFNVKNVSVKELRRGYV 426 L EA+ GDNVG ++ + +++RG V Sbjct: 343 LDEALAGDNVGLLLRGIQKADIQRGMV 369 >At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein, putative similar to EF-1-alpha-related GTP-binding protein gi|1009232|gb|AAA79032 Length = 532 Score = 37.5 bits (83), Expect = 0.006 Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 2/83 (2%) Frame = +3 Query: 15 VAFVPISGWHGDNMLEPSTK--MPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKP 188 V F+PISG G NM + + PW W G E LD+I P R + P Sbjct: 283 VVFLPISGLMGKNMDQRMGQEICPW---W---------SGPSFFEVLDSIEIPPRDPNGP 330 Query: 189 LRLPLQDVYKIGGIGTVPVGRVK 257 R+P+ D +K +GTV +G+V+ Sbjct: 331 FRMPIIDKFK--DMGTVVMGKVE 351 Score = 27.5 bits (58), Expect = 6.5 Identities = 13/51 (25%), Positives = 27/51 (52%) Frame = +1 Query: 340 EALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVL 492 + ++ A PG+N+ + + +++ G+V S NP +F AQ+ +L Sbjct: 380 DKVKRAGPGENLRVRITGIEDEDILSGFVL-SSIVNPVPAVTEFVAQLQIL 429 >At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / EF-1-alpha, putative contains similarity to SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha) [Aeropyrum pernix] Length = 667 Score = 33.9 bits (74), Expect = 0.075 Identities = 14/38 (36%), Positives = 22/38 (57%) Frame = +3 Query: 126 GKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTV 239 G CL++A+D++ P R KPL +P+ D + G V Sbjct: 447 GPCLLDAVDSVKSPDRDVSKPLLMPICDAVRSTSQGQV 484 >At1g35550.1 68414.m04414 elongation factor Tu C-terminal domain-containing protein similar to SP|P13905 Elongation factor 1-alpha (EF-1-alpha) {Arabidopsis thaliana}; contains Pfam profile PF03143: Elongation factor Tu C-terminal domain Length = 104 Score = 31.5 bits (68), Expect = 0.40 Identities = 11/12 (91%), Positives = 12/12 (100%) Frame = +3 Query: 513 NGYTPVLDCHTA 548 NGYTPVLDCHT+ Sbjct: 9 NGYTPVLDCHTS 20 >At2g46830.1 68415.m05843 myb-related transcription factor (CCA1) identical to myb-related transcription factor (CCA1) GI:4090569 from [Arabidopsis thaliana] Length = 608 Score = 30.7 bits (66), Expect = 0.70 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = +3 Query: 108 KEGKADGKCLIEALDAILPPARPTDKP 188 KE +A G + +ALD +PP RP KP Sbjct: 74 KEAEAKGVAMGQALDIAIPPPRPKRKP 100 >At4g01910.1 68417.m00251 DC1 domain-containing protein contains Pfam profile PF03107: DC1 domain Length = 651 Score = 29.9 bits (64), Expect = 1.2 Identities = 12/29 (41%), Positives = 16/29 (55%) Frame = +1 Query: 241 PSAELNWCVETRYHCCLCPRQHHY*SKVC 327 P+ L C R+HC LC R+ +Y S C Sbjct: 66 PNHTLELCSNLRFHCDLCGRRTNYLSYYC 94 >At4g32180.1 68417.m04580 eukaryotic pantothenate kinase family protein similar to pantothenate kinase [Emericella nidulans] GI:4191500; contains Pfam profiles PF03630: Fumble, PF01937: Protein of unknown function Length = 901 Score = 29.1 bits (62), Expect = 2.1 Identities = 13/35 (37%), Positives = 21/35 (60%) Frame = -3 Query: 363 RYSFLESFVVLSTDFTSVVMLAGAKTTMVPGFNTP 259 + S++E FV T+ T+ V + +KTT + GF P Sbjct: 463 KISWMEKFVRRGTEITAPVPMTPSKTTGLGGFEVP 497 >At3g05990.1 68416.m00684 leucine-rich repeat family protein contains leucine rich-repeat (LRR) domains Pfam:PF00560, INTERPRO:IPR001611; contains similarity to leaf senescence-associated receptor-like protein kinase [Phaseolus vulgaris] gi|9837280|gb|AAG00510 Length = 517 Score = 29.1 bits (62), Expect = 2.1 Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Frame = -1 Query: 278 YLV-STHQFNSADGHGTNTTDFVYVLQGKTQGLVSGAGRWQDGIESFNE 135 Y++ +T+ + +G GT F ++ G G+V+ + DG+ S+ E Sbjct: 98 YMIRTTYYYGGVNGKGTPPPVFDQIVDGTLWGIVNTTADYADGLASYYE 146 >At1g47840.1 68414.m05325 hexokinase, putative similar to hexokinase 1 [Arabidopsis thaliana] Swiss-Prot:Q42525 Length = 493 Score = 28.7 bits (61), Expect = 2.8 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = +3 Query: 57 LEPSTKMPWFKGWQVERKEGKADGKCLIEALDA 155 ++ T W KG++V EGK CL EA++A Sbjct: 189 IDSGTLSKWTKGFKVSGMEGKNVVACLNEAMEA 221 >At5g19490.1 68418.m02322 repressor protein-related similar to repressor protein [Oryza sativa] GI:18481624 Length = 236 Score = 27.9 bits (59), Expect = 4.9 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = -2 Query: 238 TVPIPPILYTSCRGRRRGLSVGRAGGRMASRASMR 134 T + + +TSC RRG GR+ GR S S++ Sbjct: 92 TTQMHEVKHTSCGRGRRGRGRGRSSGRTGSGLSLK 126 >At1g18900.2 68414.m02353 pentatricopeptide (PPR) repeat-containing protein low similarity to 67kD chloroplastic RNA-binding protein, P67 [Arabidopsis thaliana] GI:9755842; contains Pfam profile PF01535: PPR repeat Length = 860 Score = 27.9 bits (59), Expect = 4.9 Identities = 20/66 (30%), Positives = 30/66 (45%) Frame = +1 Query: 31 FLDGTETTCWSLQPKCLGSRDGRWSVRKAKLTENASLKLSMPSCHLPAPLTSPCVFPCKT 210 FL+G+ T+ C+ S D ++ +L + A PS LP P C+ P + Sbjct: 18 FLNGSRTSVTDGN-SCVYSDDENCVSKRQQLRKEAGQTEKRPSSILPKPSVVGCILPGEV 76 Query: 211 YTKSVV 228 TK VV Sbjct: 77 -TKPVV 81 >At1g18900.1 68414.m02352 pentatricopeptide (PPR) repeat-containing protein low similarity to 67kD chloroplastic RNA-binding protein, P67 [Arabidopsis thaliana] GI:9755842; contains Pfam profile PF01535: PPR repeat Length = 860 Score = 27.9 bits (59), Expect = 4.9 Identities = 20/66 (30%), Positives = 30/66 (45%) Frame = +1 Query: 31 FLDGTETTCWSLQPKCLGSRDGRWSVRKAKLTENASLKLSMPSCHLPAPLTSPCVFPCKT 210 FL+G+ T+ C+ S D ++ +L + A PS LP P C+ P + Sbjct: 18 FLNGSRTSVTDGN-SCVYSDDENCVSKRQQLRKEAGQTEKRPSSILPKPSVVGCILPGEV 76 Query: 211 YTKSVV 228 TK VV Sbjct: 77 -TKPVV 81 >At5g10140.1 68418.m01174 MADS-box protein flowering locus F (FLF) identical to FLOWERING LOCUS C protein (MADS box protein FLOWERING LOCUS F) (Swiss-Prot:Q9S7Q7) [Arabidopsis thaliana] Length = 196 Score = 27.5 bits (58), Expect = 6.5 Identities = 15/28 (53%), Positives = 17/28 (60%) Frame = +1 Query: 328 GEHHEALQEAVPGDNVGFNVKNVSVKEL 411 G H+E L E V VG NVKNVS+ L Sbjct: 91 GSHYELL-ELVDSKLVGSNVKNVSIDAL 117 >At1g01060.2 68414.m00007 myb family transcription factor contains Pfam profile: PF00249 myb-like DNA-binding domain; identical to cDNA LATE ELONGATED HYPOCOTYL MYB transcription factor GI:3281845 Length = 645 Score = 27.5 bits (58), Expect = 6.5 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = +3 Query: 108 KEGKADGKCLIEALDAILPPARPTDKP 188 KE + G + +ALD +PP RP KP Sbjct: 74 KEAEVKGIPVCQALDIEIPPPRPKRKP 100 >At1g01060.1 68414.m00006 myb family transcription factor contains Pfam profile: PF00249 myb-like DNA-binding domain; identical to cDNA LATE ELONGATED HYPOCOTYL MYB transcription factor GI:3281845 Length = 645 Score = 27.5 bits (58), Expect = 6.5 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = +3 Query: 108 KEGKADGKCLIEALDAILPPARPTDKP 188 KE + G + +ALD +PP RP KP Sbjct: 74 KEAEVKGIPVCQALDIEIPPPRPKRKP 100 >At2g42410.1 68415.m05249 zinc finger (C2H2 type) family protein contains Pfam profile: PF00096 zinc finger, C2H2 type Length = 214 Score = 27.1 bits (57), Expect = 8.6 Identities = 22/66 (33%), Positives = 26/66 (39%), Gaps = 6/66 (9%) Frame = -2 Query: 295 GKDNNGT--WFQHTSLTLPTGTVPIPPILYTSCRGRRRGLSVGRAGGRM----ASRASMR 134 G+D NG + G +P PP YT RR S GG M RA +R Sbjct: 20 GEDGNGDNRVIMNHYKNYEAGLIPWPPKNYTCSFCRREFRSAQALGGHMNVHRRDRAKLR 79 Query: 133 HFPSAL 116 PS L Sbjct: 80 QIPSWL 85 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,423,851 Number of Sequences: 28952 Number of extensions: 321418 Number of successful extensions: 1052 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 1007 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1048 length of database: 12,070,560 effective HSP length: 77 effective length of database: 9,841,256 effective search space used: 1072696904 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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