Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0335
         (539 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    25   0.43 
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    23   1.7  
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    21   5.2  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    21   5.2  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    21   5.2  
DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory pro...    21   5.2  

>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 25.0 bits (52), Expect = 0.43
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 163 LGYYDTLLDNSTLLDVW 113
           L YY T  D +T+LD W
Sbjct: 310 LAYYSTTCDIATILDFW 326


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +1

Query: 382 FFQNALVGIVSFGKSNANDIYPVVLTSISSFTEWILQN 495
           + QN + G++  G S  N       +S +   EW+ QN
Sbjct: 402 YHQNEVGGVIDDGGSGQNQPESPESSSSTPRHEWVAQN 439


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -2

Query: 352 SRGHQPGPNRRRICYQSRRDHDPCTV 275
           S+  + G N   + Y S   HD CTV
Sbjct: 129 SQADRDGKNYPAVPYGSGDFHDSCTV 154


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -2

Query: 352 SRGHQPGPNRRRICYQSRRDHDPCTV 275
           S+  + G N   + Y S   HD CTV
Sbjct: 130 SQADRDGKNYPAVPYGSGDFHDSCTV 155


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -2

Query: 352 SRGHQPGPNRRRICYQSRRDHDPCTV 275
           S+  + G N   + Y S   HD CTV
Sbjct: 130 SQADRDGKNYPAVPYGSGDFHDSCTV 155


>DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory
           protein 11 protein.
          Length = 127

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -3

Query: 279 LFPAVFFVVTMSSSL 235
           L P +FFV+ ++SSL
Sbjct: 4   LVPLLFFVIAIASSL 18


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,406
Number of Sequences: 336
Number of extensions: 3337
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13201902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)