Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0335
(539 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21575| Best HMM Match : Trypsin (HMM E-Value=0) 43 1e-04
SB_35182| Best HMM Match : CUB (HMM E-Value=0) 42 2e-04
SB_11021| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 6e-04
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.002
SB_3824| Best HMM Match : Trypsin (HMM E-Value=2.8026e-45) 38 0.005
SB_43527| Best HMM Match : Trypsin (HMM E-Value=0) 33 0.11
SB_31846| Best HMM Match : Trypsin (HMM E-Value=0) 33 0.15
SB_1799| Best HMM Match : zf-C2H2 (HMM E-Value=0) 31 0.80
SB_26948| Best HMM Match : LIM (HMM E-Value=2.3e-39) 30 1.1
SB_21661| Best HMM Match : EGF_CA (HMM E-Value=0) 29 3.2
SB_58882| Best HMM Match : EGF_CA (HMM E-Value=0) 29 3.2
SB_44421| Best HMM Match : F5_F8_type_C (HMM E-Value=1.1e-29) 29 3.2
SB_33704| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_43991| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_30267| Best HMM Match : Trypsin (HMM E-Value=0) 27 7.4
SB_33125| Best HMM Match : Pkinase (HMM E-Value=0) 27 7.4
SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_36384| Best HMM Match : Keratin_B2 (HMM E-Value=2.3) 27 9.8
SB_35220| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_58268| Best HMM Match : Extensin_2 (HMM E-Value=0.002) 27 9.8
SB_8898| Best HMM Match : WSC (HMM E-Value=6.4) 27 9.8
>SB_21575| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 696
Score = 43.2 bits (97), Expect = 1e-04
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Frame = +1
Query: 235 QARTHCDNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTDLGAPAFFQNA----LV 402
QA + +C+ +Y G V + CAG R+G N D G P ++ L
Sbjct: 225 QAMLPIASHNDCKNKYYG---VSSTAHLCAGEARSGASGGCNGDSGGPLVCEDNGRWYLH 281
Query: 403 GIVSFGKSNANDIYPVVLTSISSFTEWILQ 492
G VS+GK + Y V ++S+T+WI Q
Sbjct: 282 GAVSYGKLHCPTTYYTVFARVASYTDWIKQ 311
>SB_35182| Best HMM Match : CUB (HMM E-Value=0)
Length = 963
Score = 42.3 bits (95), Expect = 2e-04
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 7/91 (7%)
Frame = +1
Query: 235 QARTHCDNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTDLGAPAFFQN------- 393
QA+ +++ C Q DR+ T+N CAG+ R GG D D G P N
Sbjct: 368 QAKVPLVSRDQCSHQQSYGDRI-TENMLCAGM-RQGGVDSCQGDSGGPFVCTNPENPRQW 425
Query: 394 ALVGIVSFGKSNANDIYPVVLTSISSFTEWI 486
LVG+ S+GK A + + ++ + WI
Sbjct: 426 TLVGVTSWGKGCARALKYGIYANVRRYLHWI 456
>SB_11021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1033
Score = 41.1 bits (92), Expect = 6e-04
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Frame = +1
Query: 223 RQPPQARTHCDNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTDLGAPAFFQNA-- 396
R P QA + ENCR +Y V + CAG R+ N D G P ++
Sbjct: 906 RHPQQAMLPIASHENCRRKYGD---VSSTAHLCAGEARSDAAGGCNGDSGGPLVCEDNGS 962
Query: 397 --LVGIVSFGKSNANDIYPVVLTSISSFTEWI 486
L G VS+G + V ++S+T+WI
Sbjct: 963 WFLHGAVSYGMKYCPTTHYTVFARVASYTDWI 994
Score = 36.7 bits (81), Expect = 0.012
Identities = 27/77 (35%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Frame = +1
Query: 268 CREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTDLGAPAFFQNA----LVGIVSFGKSNAN 435
CR+QY+ DR CAG R G N D G P + + L G VS+G
Sbjct: 649 CRKQYRV-DRTAHP---CAGEARVGAAGGCNGDSGGPLVCEQSGVWVLHGAVSYGARWCP 704
Query: 436 DIYPVVLTSISSFTEWI 486
Y V T +SS+ WI
Sbjct: 705 TDYYTVFTRVSSYVAWI 721
>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 39.1 bits (87), Expect = 0.002
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Frame = +1
Query: 235 QARTHCDNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTDLGAPAFFQNA----LV 402
QA + ENCR +Y V + CAG R+ N D G P ++ L
Sbjct: 580 QAMLPIASHENCRRKYGD---VSSTAHLCAGEARSDAAGGCNGDSGGPLVCEDNGSWFLH 636
Query: 403 GIVSFGKSNANDIYPVVLTSISSFTEWI 486
G VS+G N + V ++S+T+WI
Sbjct: 637 GAVSYGLRNCPTTHYTVFARVASYTDWI 664
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = +1
Query: 358 NTDLGAPAFFQNA----LVGIVSFGKSNANDIYPVVLTSISSFTEWI 486
N D G P ++ L G VS+G N + V ++S+T+WI
Sbjct: 284 NGDSGGPLVCEDNGSWFLHGAVSYGLRNCPTTHYTVFARVASYTDWI 330
>SB_3824| Best HMM Match : Trypsin (HMM E-Value=2.8026e-45)
Length = 234
Score = 37.9 bits (84), Expect = 0.005
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 4/88 (4%)
Frame = +1
Query: 235 QARTHCDNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTDLGAPAFFQN----ALV 402
QAR + E+C+ +Y + + CAG + D G P + L
Sbjct: 89 QARIPIASHEDCKRKYGSG--IYSYTHLCAGEAKPNAAGACQGDSGGPLVCERNGQWTLY 146
Query: 403 GIVSFGKSNANDIYPVVLTSISSFTEWI 486
G+VSFG N V T +S++ +WI
Sbjct: 147 GVVSFGAGNCEVTSYTVYTKVSNYLDWI 174
>SB_43527| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 366
Score = 33.5 bits (73), Expect = 0.11
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 12/91 (13%)
Frame = +1
Query: 262 ENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTDLGAPAFFQN------------ALVG 405
+ CR+ + D +VT N FCAG + D D G P N L+G
Sbjct: 277 QTCRKAHP--DYIVTANMFCAGFENSSRGDACQGDSGGPFSVDNPLPATPKGQHRHVLLG 334
Query: 406 IVSFGKSNANDIYPVVLTSISSFTEWILQNV 498
++S+G V T + +F +WIL +
Sbjct: 335 VISWGDGCGKFGKYGVYTRLFNFIDWILNEI 365
Score = 29.9 bits (64), Expect = 1.4
Identities = 8/24 (33%), Positives = 17/24 (70%)
Frame = +2
Query: 38 HPEFSEENYDKDVSIVRVTHAIHF 109
HP +S ++YD D++++R+ + F
Sbjct: 199 HPHYSPDSYDSDIALIRLAQPVTF 222
>SB_31846| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 454
Score = 33.1 bits (72), Expect = 0.15
Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
Frame = +1
Query: 235 QARTHCDNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTDLGAPAFFQN----ALV 402
QA+T + C + V+ CA + G D D G P +N LV
Sbjct: 362 QAKTKLLSYAECTKNGSYEAAAVSSTMLCA---QVPGIDTCQGDSGGPLVCENNNKWTLV 418
Query: 403 GIVSFGKSNANDIYPVVLTSISSFTEWILQNV 498
G+ S+G A+ YP + ++ +W+ ++
Sbjct: 419 GVTSWGYGCAHPDYPGIYAKLTELKDWVFHHM 450
>SB_1799| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 907
Score = 30.7 bits (66), Expect = 0.80
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = -2
Query: 382 RQGHPSQYCRSRGHQPGPNRR--RICYQSRRD 293
RQG P +YCRS Q GP RR R Y +R+
Sbjct: 338 RQGTPDEYCRSSVKQIGPFRRFERRGYSKKRN 369
>SB_26948| Best HMM Match : LIM (HMM E-Value=2.3e-39)
Length = 351
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -2
Query: 403 LLAHFGRRQGHPSQYCRSRGHQPGPNRRRICYQSRRDHDPCTV 275
L+ H G R +PS+ C + P +++ YQS+ HD C +
Sbjct: 162 LICH-GCRGINPSKVCAACNGDFAPGEKKVGYQSKTFHDKCFI 203
>SB_21661| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 1202
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = +1
Query: 130 CYYPTRCRNTPGYFC*SARMGNYRSRRQCI*RQPPQARTH-CDNKENC 270
C+ C NT G F + +G +C+ + TH CD+ NC
Sbjct: 876 CHSDANCTNTKGSFFCTCHVGYSGDGVKCVDINECTSNTHNCDSNANC 923
>SB_58882| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 1027
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = +1
Query: 130 CYYPTRCRNTPGYFC*SARMGNYRSRRQCI*RQPPQARTH-CDNKENC 270
C+ C NT G F + +G +C+ + TH CD+ NC
Sbjct: 290 CHSDANCTNTKGSFFCTCHVGYSGDGVKCVDINECTSNTHNCDSNANC 337
>SB_44421| Best HMM Match : F5_F8_type_C (HMM E-Value=1.1e-29)
Length = 642
Score = 28.7 bits (61), Expect = 3.2
Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 4/93 (4%)
Frame = -2
Query: 430 HCSFQKIRCLLAHFGRRQGH---PSQYCRSRGHQPGPNRRRICYQSR-RDHDPCTVPCSF 263
HC K +C L R + + PS R H P+ + QS+ + D T C
Sbjct: 34 HCPLSK-KCDLTLAVRDKNYKNDPSFITAWRRHNTQPSSPKDKRQSKILEFDTRT--CGI 90
Query: 262 LCCHNEFELVEVAVRYTAALNGSSPSEQINKNT 164
L C E E EV R + + P++ + KNT
Sbjct: 91 LLCPAENEAEEVGTRLSIICQLTGPTDHVIKNT 123
>SB_33704| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 677
Score = 28.7 bits (61), Expect = 3.2
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Frame = -2
Query: 448 RGRCHWHCSFQKIRCLLAHFGRRQGHPSQYCRSRGHQPGPNRRRICYQSRRDHDPCTVPC 269
R CH F+++ LLA F R+ HP + R H P R++C+ C
Sbjct: 249 RQMCHPLAPFRQMCYLLAPFRRQMCHPLAHFRQMCHPLAP-FRQMCHPLAHFRQMCHPLA 307
Query: 268 SF-LCCH 251
F CH
Sbjct: 308 PFRQMCH 314
>SB_43991| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1149
Score = 27.9 bits (59), Expect = 5.6
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = -2
Query: 235 VEVAVRYTAALNGSSPSEQI-NKNTLGYYDTLLDNSTLLDVWAEVDGMCYSYDAHILVVI 59
+++ V Y AA+ S Q N+N L Y + D + A + M SY+ + +
Sbjct: 303 MKIKVNYVAAVQDESTYSQFYNENNLKYEEEFTDVLENIKTRARIVIMVTSYNMAVEGMH 362
Query: 58 LLREFGMVNSK 26
L + G++N +
Sbjct: 363 LAKNRGLINGE 373
>SB_30267| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 282
Score = 27.5 bits (58), Expect = 7.4
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Frame = +1
Query: 301 VTDNKFCAGLVRAGGRDYDNTDLGAPAFFQN-----ALVGIVSFGKSNANDI-YPVVLTS 462
VT+ CAG G++ N D G P +N L G+VS+G + + V
Sbjct: 206 VTETMLCAGDAGKTGKNGCNGDSGGPFVCRNTAGQWVLQGVVSWGDPECSSANHFSVFAR 265
Query: 463 ISSFTEWI 486
+S WI
Sbjct: 266 VSVLRHWI 273
>SB_33125| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 937
Score = 27.5 bits (58), Expect = 7.4
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = -1
Query: 350 SRPPARTKPAQNLLSVTTRS*P 285
+RPP KPA N LS T RS P
Sbjct: 594 ARPPPTAKPAVNRLSPTRRSLP 615
>SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1465
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +1
Query: 256 NKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTDLGAPAFFQNA 396
N C++ Y+ VT N CAG + RD N D G F ++
Sbjct: 1323 NHNACKKAYENETWPVTSNMLCAG-YKNKSRDSCNRDSGGGFVFYDS 1368
Score = 27.1 bits (57), Expect = 9.8
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +2
Query: 35 NHPEFSEENYDKDVSIVRV 91
+HP FS YD D++++R+
Sbjct: 1249 SHPRFSWRTYDSDIALIRL 1267
>SB_36384| Best HMM Match : Keratin_B2 (HMM E-Value=2.3)
Length = 199
Score = 27.1 bits (57), Expect = 9.8
Identities = 8/19 (42%), Positives = 10/19 (52%)
Frame = -3
Query: 180 RSTKIPWGITTPCWIIAPC 124
R T + W PCW+ PC
Sbjct: 137 RDTVLSWSPMIPCWVGTPC 155
>SB_35220| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 166
Score = 27.1 bits (57), Expect = 9.8
Identities = 14/62 (22%), Positives = 28/62 (45%)
Frame = -2
Query: 247 EFELVEVAVRYTAALNGSSPSEQINKNTLGYYDTLLDNSTLLDVWAEVDGMCYSYDAHIL 68
EF ++ + + T + +GS + +N Y D +D T+L V + +H++
Sbjct: 13 EFLMLVIFTKGTCSNSGSQQALHVNITCEKYLDVYVDGETMLTGVQGVHSILIDSSSHVM 72
Query: 67 VV 62
V
Sbjct: 73 AV 74
>SB_58268| Best HMM Match : Extensin_2 (HMM E-Value=0.002)
Length = 458
Score = 27.1 bits (57), Expect = 9.8
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = +1
Query: 142 TRCRNTPGYFC*SARMGNYRSRRQCI*RQPPQARTHCDNKENCREQYKGH 291
TRC N C GNY +R+C PP + + K C KG+
Sbjct: 320 TRCTNYRKRRCPPLAKGNYYRKRRC----PPLTKGNYYRKRRCPPLTKGN 365
>SB_8898| Best HMM Match : WSC (HMM E-Value=6.4)
Length = 165
Score = 27.1 bits (57), Expect = 9.8
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Frame = -2
Query: 451 LRGRCHW--HCSFQKIRCLLAHFGRRQGHPSQYCRSRGHQPGPNRRR----ICYQSRRDH 290
++ +CH+ HC + K C + ++ R + R + + P R R CY+ RD
Sbjct: 49 IKHKCHYKYHC-YLKCSCKVKYYHCRYRRRCVW-RYKYYHGKPRRYRHCYRYCYRRIRDA 106
Query: 289 DPCTVPCS 266
P PCS
Sbjct: 107 SPVYYPCS 114
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,526,182
Number of Sequences: 59808
Number of extensions: 438402
Number of successful extensions: 1088
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1084
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -