Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0335
(539 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016668-7|AAB66091.3| 471|Caenorhabditis elegans Hypothetical ... 35 0.033
U37430-5|AAB52674.2| 389|Caenorhabditis elegans Set (trithorax/... 33 0.17
Z66498-2|CAA91291.2| 419|Caenorhabditis elegans Hypothetical pr... 32 0.30
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l... 32 0.30
Z70681-1|CAA94580.1| 307|Caenorhabditis elegans Hypothetical pr... 31 0.53
U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like p... 31 0.53
U97593-6|AAB52879.2| 925|Caenorhabditis elegans Prion-like-(q/n... 29 1.6
U97593-5|AAB52880.1| 1175|Caenorhabditis elegans Prion-like-(q/n... 29 1.6
Z82060-2|CAB04882.1| 421|Caenorhabditis elegans Hypothetical pr... 29 2.1
>AF016668-7|AAB66091.3| 471|Caenorhabditis elegans Hypothetical
protein F36H9.1 protein.
Length = 471
Score = 35.1 bits (77), Expect = 0.033
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Frame = -2
Query: 367 SQYCRSRGHQPGPNRRRICYQSRRDHDPCTVPCSFLCCHNEFE-LVEVAVRYTAALNGSS 191
+++C + P ICY S+RD T C C+ +E + V + +++N +
Sbjct: 382 TEFCNREQNIEVPLGNVICYLSKRDQSERTKYCIGQKCYLFYEDINNVKEKGCSSVNDEA 441
Query: 190 PSEQINKNTLGYY---DTLLDNSTLL 122
P E+ LGYY D L N LL
Sbjct: 442 PEEEKRLGKLGYYTYCDENLCNGDLL 467
>U37430-5|AAB52674.2| 389|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 12
protein.
Length = 389
Score = 32.7 bits (71), Expect = 0.17
Identities = 20/73 (27%), Positives = 34/73 (46%)
Frame = +1
Query: 112 PKHPAGCYYPTRCRNTPGYFC*SARMGNYRSRRQCI*RQPPQARTHCDNKENCREQYKGH 291
PK G T C+ G C + N+ + R+C P+ ++C+N+ + Q+ G
Sbjct: 45 PKRKTGLLTVTSCKC--GTDCTTEECSNFANHREC-----PRGCSNCENQRFRKRQFCGV 97
Query: 292 DRVVTDNKFCAGL 330
+ +TDN GL
Sbjct: 98 ETFLTDNGIGHGL 110
>Z66498-2|CAA91291.2| 419|Caenorhabditis elegans Hypothetical
protein M195.2 protein.
Length = 419
Score = 31.9 bits (69), Expect = 0.30
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 73 CEHRTSNTCHPLRPKHPAGCYYPTRCRNTPGYFC 174
C+ +N+C L P+ GC PT CRNT C
Sbjct: 275 CQTGCANSCAQLSPQPTEGC--PTNCRNTCNEVC 306
>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
lipoprotein receptorrelated protein 2 protein.
Length = 2192
Score = 31.9 bits (69), Expect = 0.30
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Frame = +1
Query: 73 CEHRTS--NT-CHPLRPKHPAGCYYPTRCRNTPGYFC*SARMGNYRSRRQCI*RQPPQAR 243
CE + NT C P+ K P C+ RC +TPGY + + R + P Q
Sbjct: 1863 CEQNAAAHNTDCSPICQKQPNWCHNGGRCLDTPGYPGKCKCLPRFAGPRCDV---PVQCD 1919
Query: 244 THCDNKENC 270
+C N C
Sbjct: 1920 DYCTNNSKC 1928
>Z70681-1|CAA94580.1| 307|Caenorhabditis elegans Hypothetical
protein C30F2.1 protein.
Length = 307
Score = 31.1 bits (67), Expect = 0.53
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = +1
Query: 97 CHPLRPKHPAGCYYPTRCRNTPGYFC*SARMG--NYRS--RRQCI*RQ 228
C P+RPK P G P CR PG R G NY + ++CI R+
Sbjct: 102 CEPIRPKCPPGPPGPPGCRGEPGPSGLPGRRGINNYETLPLKKCIWRE 149
>U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like
protease protein 2 protein.
Length = 265
Score = 31.1 bits (67), Expect = 0.53
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Frame = +1
Query: 316 FCAGLVRAGGRDYDNTDLGAPAFFQN-----ALVGIVSFGKSNANDIYPVVLTSISSFTE 480
FCAG + GG D D G P + L G++S+G A P + T ++ +
Sbjct: 196 FCAGYLE-GGIDSCQGDSGGPFACRREDGAFVLAGVISWGDGCAQKKQPGIYTMVAPYLS 254
Query: 481 WI 486
WI
Sbjct: 255 WI 256
>U97593-6|AAB52879.2| 925|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
isoform c protein.
Length = 925
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = -2
Query: 379 QGHPSQYCRSRGHQPGPNRRRICYQSRRDHDPCTV 275
+GH RGH P P R R Y + HDPC V
Sbjct: 221 KGHVPGDANYRGHGPDPPRLRPKY-TADSHDPCNV 254
>U97593-5|AAB52880.1| 1175|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
isoform a protein.
Length = 1175
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = -2
Query: 379 QGHPSQYCRSRGHQPGPNRRRICYQSRRDHDPCTV 275
+GH RGH P P R R Y + HDPC V
Sbjct: 340 KGHVPGDANYRGHGPDPPRLRPKY-TADSHDPCNV 373
>Z82060-2|CAB04882.1| 421|Caenorhabditis elegans Hypothetical
protein T27F6.2 protein.
Length = 421
Score = 29.1 bits (62), Expect = 2.1
Identities = 22/85 (25%), Positives = 30/85 (35%)
Frame = +1
Query: 121 PAGCYYPTRCRNTPGYFC*SARMGNYRSRRQCI*RQPPQARTHCDNKENCREQYKGHDRV 300
PAG ++ T C N PGY+ + G QC P N NC D +
Sbjct: 266 PAGFWFSTNC-NNPGYYICKRQAG-----VQCSAAPPATVTPSPANPSNCNAGRLMSDGI 319
Query: 301 VTDNKFCAGLVRAGGRDYDNTDLGA 375
+T F Y + LG+
Sbjct: 320 ITSPNFPQNYFNNANCAYQISTLGS 344
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,461,512
Number of Sequences: 27780
Number of extensions: 309120
Number of successful extensions: 922
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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