Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0335
         (539 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g18640.2 68414.m02324 3-phosphoserine phosphatase (PSP) nearl...    32   0.28 
At1g18640.1 68414.m02323 3-phosphoserine phosphatase (PSP) nearl...    32   0.28 
At1g49740.1 68414.m05578 expressed protein similar to MAP3K-like...    31   0.65 
At5g25170.1 68418.m02984 expressed protein                             28   3.5  
At1g63570.1 68414.m07186 receptor-like protein kinase-related co...    28   3.5  
At1g62260.1 68414.m07024 pentatricopeptide (PPR) repeat-containi...    28   3.5  
At3g45260.1 68416.m04887 zinc finger (C2H2 type) family protein ...    28   4.6  
At5g32590.1 68418.m03867 myosin heavy chain-related similar to M...    27   6.1  
At4g23860.2 68417.m03431 PHD finger protein-related similar to P...    27   8.0  
At4g23860.1 68417.m03430 PHD finger protein-related similar to P...    27   8.0  
At4g11510.1 68417.m01849 expressed protein  ; expression support...    27   8.0  

>At1g18640.2 68414.m02324 3-phosphoserine phosphatase (PSP) nearly
           identical to 3-phosphoserine phosphatase GI:3759177 from
           [Arabidopsis thaliana]
          Length = 295

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = -2

Query: 169 NTLGYYDTLLDNSTLLDVWAEVDGMCYSYDAHILV 65
           +TLG+   ++ +  +LD+W  V+ +C+  D+ + V
Sbjct: 62  STLGHEGNIVPSKEILDLWRSVEAVCFDVDSTVCV 96


>At1g18640.1 68414.m02323 3-phosphoserine phosphatase (PSP) nearly
           identical to 3-phosphoserine phosphatase GI:3759177 from
           [Arabidopsis thaliana]
          Length = 295

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = -2

Query: 169 NTLGYYDTLLDNSTLLDVWAEVDGMCYSYDAHILV 65
           +TLG+   ++ +  +LD+W  V+ +C+  D+ + V
Sbjct: 62  STLGHEGNIVPSKEILDLWRSVEAVCFDVDSTVCV 96


>At1g49740.1 68414.m05578 expressed protein similar to MAP3K-like
           protein kinase GB:CAB16796 GI:4006878 from [Arabidopsis
           thaliana]
          Length = 359

 Score = 30.7 bits (66), Expect = 0.65
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
 Frame = -2

Query: 268 SFLCCHNEF-ELVEVAVRYTAAL----NGSSPSEQINKNTLGYYDTLLDNSTLLDVWA-- 110
           S+L  HN F  L EV+   +A L       S + Q+N    G+   + D     D+W   
Sbjct: 79  SWLTTHNSFARLGEVSRTGSAILAPTNQQDSITSQLNNGVRGFMLDMYDFQN--DIWLCH 136

Query: 109 EVDGMCYSYDAHILVVILLREF 44
             DG C+++ A    + +LREF
Sbjct: 137 SFDGTCFNFTAFQPAINILREF 158


>At5g25170.1 68418.m02984 expressed protein
          Length = 218

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 312 QILRRFGPGWWPRLRQY*LGCPCLLP 389
           Q+ RR  P W  RL ++ L C C+LP
Sbjct: 127 QLTRRSIPSWVNRLARFGLFCNCVLP 152


>At1g63570.1 68414.m07186 receptor-like protein kinase-related
           contains Pfam profile: PF01657 Domain of unknown
           function DUF26; similar to receptor-like protein kinase
           4 (GI:13506745) [Arabidopsis thaliana]
          Length = 284

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
 Frame = -2

Query: 292 HDPCTVPCSFLCCHNEFELVEVAVRYTAALNGSSPSEQINKNTLGYYDTLLDN---STLL 122
           +D C V  S +   +EFE   V VRY  +L  +  S + N+      D L+ N   STL+
Sbjct: 116 YDECMVRYSNVSFFSEFESKPVIVRY--SLRSAPNSNRFNQTLSNKLDQLIPNVSPSTLI 173

Query: 121 DVWAE 107
             + E
Sbjct: 174 PYFVE 178


>At1g62260.1 68414.m07024 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 656

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 358 NTDLGAPAFFQNALVGIVSFGKSNANDIYPVVLTSIS 468
           N  +G  AF  NA   +  FG   +N IYP  +T +S
Sbjct: 479 NAMIGGYAFHGNASEALNLFGSMKSNGIYPSHITFVS 515


>At3g45260.1 68416.m04887 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 446

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 20/65 (30%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
 Frame = +1

Query: 250 CDNKE---NCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTDLGAPAFFQNALVGIVSFG 420
           C  KE   +C   +   D  +T   FC  L     R        APA+  NAL   V+ G
Sbjct: 167 CGTKEYRCDCGTLFSRKDSFITHRAFCDALAEESARFVSVPP--APAYLNNALDVEVNHG 224

Query: 421 KSNAN 435
             N N
Sbjct: 225 NINQN 229


>At5g32590.1 68418.m03867 myosin heavy chain-related similar to
           Myosin heavy chain, non-muscle (Zipper protein) (Myosin
           II)(SP:Q99323) {Drosophila melanogaster}
          Length = 761

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
 Frame = -2

Query: 307 QSRRDHDP---CTVPCSFLCCHNEFELVEVAVRYTAALNGSSPSEQINKNTL 161
           +S  DH P   C     F  C   F L E  VRY AAL  + P  Q+  N L
Sbjct: 67  ESPEDHRPGFFCVYEIYFKGCGLTFPLPEALVRYLAALEIALP--QLTPNLL 116


>At4g23860.2 68417.m03431 PHD finger protein-related similar to Pfam
           profiles PF02207: Putative zinc finger in N-recognin,
           weak hit to PF00628: PHD-finger
          Length = 452

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 19/64 (29%), Positives = 28/64 (43%)
 Frame = -2

Query: 283 CTVPCSFLCCHNEFELVEVAVRYTAALNGSSPSEQINKNTLGYYDTLLDNSTLLDVWAEV 104
           C+  CSFL  + E   V   V  T + N  S + +++KN +       +N T  D    V
Sbjct: 191 CSPACSFLTLYPENLWVVAKVDSTGSANACSETIELDKNHMDSEPGQPENGT--DAEKSV 248

Query: 103 DGMC 92
            G C
Sbjct: 249 VGKC 252


>At4g23860.1 68417.m03430 PHD finger protein-related similar to Pfam
           profiles PF02207: Putative zinc finger in N-recognin,
           weak hit to PF00628: PHD-finger
          Length = 452

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 19/64 (29%), Positives = 28/64 (43%)
 Frame = -2

Query: 283 CTVPCSFLCCHNEFELVEVAVRYTAALNGSSPSEQINKNTLGYYDTLLDNSTLLDVWAEV 104
           C+  CSFL  + E   V   V  T + N  S + +++KN +       +N T  D    V
Sbjct: 191 CSPACSFLTLYPENLWVVAKVDSTGSANACSETIELDKNHMDSEPGQPENGT--DAEKSV 248

Query: 103 DGMC 92
            G C
Sbjct: 249 VGKC 252


>At4g11510.1 68417.m01849 expressed protein  ; expression supported
           by MPSS
          Length = 85

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +1

Query: 55  GELRQGCEHRTSNTCHPLRPKHPAGCYYPTRCR 153
           G+ + GC+H       P  P H  GC    RCR
Sbjct: 42  GDRQPGCDHGNCPPDQPANPYH-RGCEKSKRCR 73


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,633,668
Number of Sequences: 28952
Number of extensions: 280108
Number of successful extensions: 766
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)