Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0334
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces p...    52   1e-07
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc...    27   2.1  
SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar...    27   2.8  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   4.8  
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    25   8.5  
SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1 |Sc...    25   8.5  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    25   8.5  

>SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 227

 Score = 51.6 bits (118), Expect = 1e-07
 Identities = 22/51 (43%), Positives = 34/51 (66%)
 Frame = +3

Query: 519 DVVLKVDTENFLSPDTCGGIELVAARGLIKISNTLESRLELIAQQLLPEIR 671
           D  L  +T++FL+    GG+ LV   G I++ NTL +RLE++ ++ LPEIR
Sbjct: 163 DYELDAETDDFLNDSVLGGVVLVGLGGKIRVDNTLRARLEIVKEEALPEIR 213



 Score = 50.8 bits (116), Expect = 2e-07
 Identities = 24/86 (27%), Positives = 50/86 (58%)
 Frame = +1

Query: 256 NMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQALFQLMEPTVT 435
           N+LN++RL++L  ++  + ++     K+L  + +    Y++ +  LIVQA+  L EP   
Sbjct: 74  NVLNKSRLEILNSKQKVIDDIFSRVEKKLDGIEQKKDAYTKFMADLIVQAMELLGEPVGI 133

Query: 436 IRVRQTDKALVESLLGKAQQDYKNRS 513
           +  RQ D  +V++ + KA +  K+++
Sbjct: 134 VYSRQRDAEIVKAAIPKATEVLKSKN 159


>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 835

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = -1

Query: 626 LQSVADLDKSPGCNQLDTTTGVGRQKVLSVDFQHNVLLDLFL 501
           LQ V+ +  SP    L     VG+ +V+S DF    LLDL L
Sbjct: 223 LQHVSHISISPNARYLALYESVGKVRVISSDFSKE-LLDLRL 263


>SPBC215.10 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +1

Query: 301 DHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQALFQLMEP 426
           D   N L+EA+KRLA +P D     E+ +T  +   F+++ P
Sbjct: 181 DDDTNGLEEAKKRLAGIPSD-----EVALTQALPQTFEIIPP 217


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -3

Query: 504 LVVLLSFSEQGLHQSLVGLTDADGDSGFHELEESLHNKCDQQL*VQFGV 358
           L+V     EQG    ++   D+  +SG HE+ + L N  DQQL  Q  +
Sbjct: 492 LIVACEELEQGFDLDIL---DSLRESGIHEVIQLLRNFPDQQLEKQLNI 537


>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = -3

Query: 432 DSGFHELEESLHNKCDQQL*VQF-GVLWHFSQALASFIKYITYVIFTHFQYLQTSLVQHV 256
           +S F  +EESL  K   +    F  + +  S ++   I+ I Y I THF     S+++H+
Sbjct: 241 ESLFTSIEESLSLKFGWRTRRFFRSMFYERSWSVERVIECIRYSILTHFYGNALSIIEHL 300


>SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -2

Query: 313 YVRDLHALSVPSDEL 269
           +V DLHAL+VP D L
Sbjct: 56  FVADLHALTVPQDPL 70


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 624 ESRLELIAQQLLPEIRNASSDAT 692
           ESR+ ++A QLL  + +AS D T
Sbjct: 226 ESRVNIVADQLLKLVVSASKDVT 248


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,601,892
Number of Sequences: 5004
Number of extensions: 48433
Number of successful extensions: 160
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)