Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0334
(734 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0134 + 26805329-26805430,26807130-26807230,26807876-268080... 64 1e-10
05_05_0231 + 23488588-23488689,23488775-23488875,23489012-234891... 58 1e-08
01_01_0858 - 6699126-6699128,6699219-6699318,6700052-6700278,670... 57 2e-08
09_02_0115 + 4413714-4414475 32 0.54
10_08_0762 - 20410681-20411834,20411999-20412098,20412200-204122... 30 2.2
09_03_0047 - 11867302-11867356,11867461-11868032,11868485-118688... 30 2.2
11_05_0100 - 19056465-19056470,19057043-19057276,19058391-190585... 29 5.1
03_06_0108 + 31708713-31709079,31709258-31709822,31709933-317100... 28 6.7
03_05_0331 - 23233883-23233972,23234099-23234164,23234300-232343... 28 6.7
04_04_0243 - 23858975-23860706,23861178-23861230,23861338-238615... 28 8.8
>01_06_0134 +
26805329-26805430,26807130-26807230,26807876-26808032,
26808386-26808582,26809188-26809287,26809501-26809536
Length = 230
Score = 64.1 bits (149), Expect = 1e-10
Identities = 32/84 (38%), Positives = 53/84 (63%)
Frame = +1
Query: 262 LNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQALFQLMEPTVTIR 441
LN +R+KVL+ ++D V ++ ++A K+L V + Y LL L+VQ L +L EP V +R
Sbjct: 74 LNASRIKVLQAQDDLVNSMKEDATKQLLRVSHNHHEYKNLLKELVVQGLLRLKEPAVLLR 133
Query: 442 VRQTDKALVESLLGKAQQDYKNRS 513
R+ D VES+L A+ +Y +++
Sbjct: 134 CRKEDHHHVESVLHSAKNEYASKA 157
Score = 37.9 bits (84), Expect = 0.008
Identities = 20/51 (39%), Positives = 28/51 (54%)
Frame = +2
Query: 44 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKI 196
++DADV KQI+ M+ FI Q FNIEK +LV+ ++ KI
Sbjct: 1 MNDADVAKQIQQMVRFIRQEAEEKASEISVSAEEEFNIEKLQLVEAEKKKI 51
Score = 35.9 bits (79), Expect = 0.033
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3
Query: 570 GGIELVAARGLIKISNTLESRLELIAQQLLPEIR 671
GG+ L + G I NTL++RLE++ ++ LPEIR
Sbjct: 188 GGVVLASRDGKIVCENTLDARLEVVFRKKLPEIR 221
>05_05_0231 +
23488588-23488689,23488775-23488875,23489012-23489168,
23489365-23489594,23489696-23489795,23489878-23489916
Length = 242
Score = 57.6 bits (133), Expect = 1e-08
Identities = 35/99 (35%), Positives = 57/99 (57%), Gaps = 11/99 (11%)
Frame = +1
Query: 262 LNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ-----------AL 408
LN AR+KVL+ ++ V + ++A K L V KD Y ++L LIVQ +L
Sbjct: 74 LNAARIKVLRAQDGVVGEMKEDAGKSLLRVTKDATAYRKVLKGLIVQRKDSEIIDQIQSL 133
Query: 409 FQLMEPTVTIRVRQTDKALVESLLGKAQQDYKNRSRRTL 525
+L EP+V +R R+ D+ VES+L A+++Y +++ L
Sbjct: 134 LRLREPSVVLRCREADRGHVESVLEAAKKEYAEKAKVNL 172
Score = 35.5 bits (78), Expect = 0.044
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = +2
Query: 44 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKI 196
++DADV KQI+ M+ FI Q FNIEK +LV+ ++ +I
Sbjct: 1 MNDADVGKQIQQMVRFILQEAEEKASEISVAAEEEFNIEKLQLVESEKRRI 51
Score = 34.7 bits (76), Expect = 0.077
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = +3
Query: 558 PDTCGGIELVAARGLIKISNTLESRLELIAQQLLPEIR 671
P GG+ + + G I NTL++R+E+ +Q LPEIR
Sbjct: 195 PFCSGGVVIASQDGKIVCDNTLDARVEISFKQKLPEIR 232
>01_01_0858 -
6699126-6699128,6699219-6699318,6700052-6700278,
6701032-6701188,6701422-6701522,6702147-6702251
Length = 230
Score = 56.8 bits (131), Expect = 2e-08
Identities = 33/94 (35%), Positives = 55/94 (58%), Gaps = 10/94 (10%)
Frame = +1
Query: 262 LNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ----------ALF 411
LN +RL+VL+ ++D ++L+ A K L + +D +Y LL IVQ +L
Sbjct: 75 LNASRLEVLQAQDDLAMSMLEAAGKELLYITRDHHVYKNLLRIFIVQDKLTKKNPEQSLL 134
Query: 412 QLMEPTVTIRVRQTDKALVESLLGKAQQDYKNRS 513
+L EP V +R R+ D+ LVES+L A+ +Y +++
Sbjct: 135 RLKEPAVILRCRKEDRELVESVLESAKNEYADKA 168
Score = 34.3 bits (75), Expect = 0.10
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +3
Query: 558 PDTCGGIELVAARGLIKISNTLESRLELIAQQLLPE 665
P GG+ L + G I NTL++RLE++ ++ LPE
Sbjct: 195 PSCSGGVVLASRDGKIVCENTLDARLEVVFRKKLPE 230
Score = 31.1 bits (67), Expect = 0.95
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +2
Query: 44 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKI 196
++D DV +Q+K M FI Q F IEK +LV+ ++ +I
Sbjct: 2 MNDGDVARQLKQMTDFIRQEAVEKAAEIEAAAAEEFQIEKLQLVEAEKKRI 52
>09_02_0115 + 4413714-4414475
Length = 253
Score = 31.9 bits (69), Expect = 0.54
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +3
Query: 372 LRAAGHTYCAGSLPAHGTHCHHPRPSNRQGSGG 470
LR H+ + SLP H HHPRP +GS G
Sbjct: 20 LRLFSHSSASASLPLLLGHFHHPRPVPPRGSPG 52
>10_08_0762 -
20410681-20411834,20411999-20412098,20412200-20412298,
20412563-20414133,20415080-20415128
Length = 990
Score = 29.9 bits (64), Expect = 2.2
Identities = 21/58 (36%), Positives = 32/58 (55%)
Frame = +1
Query: 232 TSEEDPILNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQA 405
T D I N + +RL++LK R+D++ N LD+A K+ E D + E V +QA
Sbjct: 814 TGTNDLIDNAV-MSRLRILKCRDDNI-NSLDDAIKQHVEACTDQPNWDEDGVVAKIQA 869
>09_03_0047 -
11867302-11867356,11867461-11868032,11868485-11868873,
11869018-11869331,11871028-11871382,11872004-11872076
Length = 585
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/46 (36%), Positives = 19/46 (41%)
Frame = +2
Query: 566 LWWYRAGCSQGTYQDQQHSGVSLGADRPAAAAGDT*RLFGRNPNVN 703
+W Y GC G DQQH LG G T F R+P N
Sbjct: 518 IWHYHGGCHVGKVVDQQHR--VLGVSGVRVVDGST---FSRSPGTN 558
>11_05_0100 -
19056465-19056470,19057043-19057276,19058391-19058546,
19059639-19059763,19059912-19059983,19060080-19060184,
19060691-19060745,19061576-19061656,19062806-19062869,
19064715-19064782,19064947-19065033,19066121-19066285,
19066310-19066429,19066485-19066607,19066738-19067019,
19067936-19068075,19068234-19068335,19068802-19068874,
19069061-19069171
Length = 722
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = -2
Query: 667 ISGSSCWAISSKRDSRVLLILISPLAATSSI--PPQVSGDKK 548
I S C A+ SK D +LIL SP+A + ++ P ++ G +K
Sbjct: 341 IDNSCCLALYSKLDEDQVLILQSPVALSKAVKNPVELDGLRK 382
>03_06_0108 +
31708713-31709079,31709258-31709822,31709933-31710015,
31710231-31710319,31710486-31710559,31710654-31710704,
31710807-31710883,31711454-31712031,31712388-31712555,
31713364-31713417,31713456-31713467,31713554-31713715
Length = 759
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 390 TYCAGSLPAHGTHCHHPRPSNRQGSGG 470
TYCAG + G H HH ++Q GG
Sbjct: 34 TYCAGGVDDVGHHHHHHVHQHQQQHGG 60
>03_05_0331 -
23233883-23233972,23234099-23234164,23234300-23234365,
23234451-23234675,23234794-23235279
Length = 310
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 492 LSFSEQGLHQSLVGLTDADGDSGFHELEESLHNKCD 385
+S EQG Q + + + +GD GF +L +S N D
Sbjct: 106 ISIQEQGAAQFMDAILNRNGDPGFDDLADSSVNLLD 141
>04_04_0243 -
23858975-23860706,23861178-23861230,23861338-23861538,
23861649-23861990,23862277-23862423,23862945-23863086,
23863876-23863959,23864772-23864779
Length = 902
Score = 27.9 bits (59), Expect = 8.8
Identities = 19/49 (38%), Positives = 22/49 (44%)
Frame = +2
Query: 452 PTRLWWSPCSEKLNKTTRIDPEGRCVESRH*ELFVARHLWWYRAGCSQG 598
P L SPC + N T D EG C S + A + RAGCS G
Sbjct: 221 PRCLMNSPCDTEQNGTISHDQEGECSTSTLRPMVEAGN----RAGCSAG 265
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,465,778
Number of Sequences: 37544
Number of extensions: 384033
Number of successful extensions: 1185
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1183
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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