Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0334
(734 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52835| Best HMM Match : vATP-synt_E (HMM E-Value=2.1e-05) 51 1e-06
SB_59516| Best HMM Match : An_peroxidase (HMM E-Value=1.5e-11) 32 0.42
SB_50642| Best HMM Match : Spectrin (HMM E-Value=1) 32 0.55
SB_20174| Best HMM Match : DedA (HMM E-Value=3.7) 31 0.73
SB_38984| Best HMM Match : Fork_head (HMM E-Value=3e-06) 30 2.2
SB_5418| Best HMM Match : Spectrin (HMM E-Value=1.50001e-40) 29 3.9
SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_8257| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0) 28 6.8
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
>SB_52835| Best HMM Match : vATP-synt_E (HMM E-Value=2.1e-05)
Length = 288
Score = 50.8 bits (116), Expect = 1e-06
Identities = 25/61 (40%), Positives = 38/61 (62%)
Frame = +1
Query: 289 KVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQALFQLMEPTVTIRVRQTDKALV 468
K E + +LDEA +RL +V +D Y +++ LI Q L+QL+E V IR R+ D +LV
Sbjct: 68 KAEEIDAKRILDEAVERLGKVTQDQGKYQQIIQGLITQGLYQLLESKVLIRCRKQDVSLV 127
Query: 469 E 471
+
Sbjct: 128 K 128
Score = 39.5 bits (88), Expect(2) = 5e-05
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = +3
Query: 570 GGIELVAARGLIKISNTLESRLELIAQQ 653
GGIEL A +G IK+ NTLESRLE++ +Q
Sbjct: 234 GGIELHAKQGKIKVVNTLESRLEMLGRQ 261
Score = 25.0 bits (52), Expect(2) = 5e-05
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +3
Query: 513 QKDVVLKVDTENFLSPD 563
+K++ L VD +NFL PD
Sbjct: 187 KKEIELTVDEQNFLGPD 203
>SB_59516| Best HMM Match : An_peroxidase (HMM E-Value=1.5e-11)
Length = 359
Score = 32.3 bits (70), Expect = 0.42
Identities = 19/47 (40%), Positives = 27/47 (57%)
Frame = +1
Query: 238 EEDPILNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSE 378
E+DP N N A + KV E+ V + L++A+K LAE T L +E
Sbjct: 44 EDDPEGNTKNNALDDMPKVTEEMVADALEKAKKSLAEEEPGTPLDTE 90
>SB_50642| Best HMM Match : Spectrin (HMM E-Value=1)
Length = 739
Score = 31.9 bits (69), Expect = 0.55
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 274 RLKVLKVREDHVRNVLDEARKRLAEV 351
R+ LK +ED ++N+LDE R + EV
Sbjct: 147 RINTLKTKEDEIKNILDEQRGKAEEV 172
>SB_20174| Best HMM Match : DedA (HMM E-Value=3.7)
Length = 228
Score = 31.5 bits (68), Expect = 0.73
Identities = 9/37 (24%), Positives = 24/37 (64%)
Frame = -3
Query: 363 GVLWHFSQALASFIKYITYVIFTHFQYLQTSLVQHVQ 253
G L H + + ++++T+ + H Q+L+++++ H+Q
Sbjct: 121 GHLQHLTSTVIGHLQHLTFTVICHLQHLKSTVIGHLQ 157
Score = 29.1 bits (62), Expect = 3.9
Identities = 9/38 (23%), Positives = 23/38 (60%)
Frame = -3
Query: 363 GVLWHFSQALASFIKYITYVIFTHFQYLQTSLVQHVQD 250
G L H + + ++++T + H Q+L ++++ H+Q+
Sbjct: 77 GHLQHLTSTVIGHLRHLTSTVIGHLQHLTSTVIGHLQN 114
Score = 28.7 bits (61), Expect = 5.2
Identities = 9/37 (24%), Positives = 22/37 (59%)
Frame = -3
Query: 363 GVLWHFSQALASFIKYITYVIFTHFQYLQTSLVQHVQ 253
G L H + + ++++T + H Q+L ++++ H+Q
Sbjct: 44 GHLQHLTSTVIGHLRHLTSTVIGHLQHLTSTVIGHLQ 80
Score = 28.7 bits (61), Expect = 5.2
Identities = 9/37 (24%), Positives = 22/37 (59%)
Frame = -3
Query: 363 GVLWHFSQALASFIKYITYVIFTHFQYLQTSLVQHVQ 253
G L H + + ++ +T+ + H Q+L ++++ H+Q
Sbjct: 99 GHLQHLTSTVIGHLQNLTFTVIGHLQHLTSTVIGHLQ 135
>SB_38984| Best HMM Match : Fork_head (HMM E-Value=3e-06)
Length = 246
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 452 PTRLWWSPCSEKLNKTTRIDP 514
P R WWS SEKL K R+ P
Sbjct: 214 PYRSWWSLASEKLRKERRMKP 234
>SB_5418| Best HMM Match : Spectrin (HMM E-Value=1.50001e-40)
Length = 514
Score = 29.1 bits (62), Expect = 3.9
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = +1
Query: 301 DHVRNVLDEARKRLAEVPK-DTKLYSELLVTLIVQALFQLMEPTVTIRVRQTDKALVESL 477
D V L+E R E+ T +L L+ FQL + + +RQTD L E L
Sbjct: 164 DLVHAQLEEVNHRWDELCNHSTGRQQKLEEALLQLGQFQLAFQELLVWLRQTDSTLDEQL 223
Query: 478 LGKAQQDYK 504
K Q D K
Sbjct: 224 AKKVQGDVK 232
>SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2992
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = +1
Query: 277 LKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLV 387
LK+LK R H RN EA+++ E ++TK++ ++ +
Sbjct: 2941 LKILKERRMHARN---EAKRQAIEKERETKIHRKIAI 2974
>SB_8257| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 710
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +1
Query: 520 TLC*KSTLRTFCRPTPVVVSSWLQ 591
+LC S L FC PTPV+VS++++
Sbjct: 658 SLCAMSGLILFCLPTPVLVSNFIK 681
>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
Length = 2858
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/37 (29%), Positives = 24/37 (64%)
Frame = +1
Query: 268 QARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSE 378
QA L+ + +D+++ D +KRLA++ + ++YS+
Sbjct: 2459 QAELEAARQSKDNLQEDFDNLQKRLAQLEAEQEIYSK 2495
>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6406
Score = 27.9 bits (59), Expect = 9.0
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +1
Query: 319 LDEARKRLAEVPK-DTKLYSELLVTLIVQALFQLMEPTVTIRVRQTDKALVESLLGKAQQ 495
L+E R E+ T +L L+ FQL + + +RQTD L E L K Q
Sbjct: 5016 LEEVNHRWDELCNHSTGRQQKLEEALLQLGQFQLAFQELLVWLRQTDSTLDEQLAKKVQG 5075
Query: 496 DYK 504
D K
Sbjct: 5076 DVK 5078
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,277,429
Number of Sequences: 59808
Number of extensions: 395163
Number of successful extensions: 1171
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1171
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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