Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0334
         (734 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045642-4|AAK67210.1|  226|Caenorhabditis elegans Vacuolar h at...    73   3e-13
Z81071-2|CAB03012.1|  618|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>AF045642-4|AAK67210.1|  226|Caenorhabditis elegans Vacuolar h
           atpase protein 8 protein.
          Length = 226

 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 36/75 (48%), Positives = 46/75 (61%)
 Frame = +1

Query: 256 NMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQALFQLMEPTVT 435
           N LN  RL+ LK REDH+  VLDEAR  L+ +  D   Y  +L  L++Q L QL+E  V 
Sbjct: 74  NSLNAGRLRCLKAREDHIGAVLDEARSNLSRISGDAARYPAILKGLVMQGLLQLLEKEVV 133

Query: 436 IRVRQTDKALVESLL 480
           +R R+ D  LVE LL
Sbjct: 134 LRCREKDLRLVEQLL 148



 Score = 61.7 bits (143), Expect = 5e-10
 Identities = 27/48 (56%), Positives = 38/48 (79%)
 Frame = +3

Query: 534 VDTENFLSPDTCGGIELVAARGLIKISNTLESRLELIAQQLLPEIRNA 677
           +D +NFL  ++ GG+EL A  G IK+S+TLESRLELIA Q++P++R A
Sbjct: 167 LDKQNFLPSESAGGVELSARAGKIKVSSTLESRLELIANQIVPQVRTA 214



 Score = 61.3 bits (142), Expect = 7e-10
 Identities = 31/52 (59%), Positives = 34/52 (65%)
 Frame = +2

Query: 44  LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIM 199
           +SD DVQKQ++HMMAFIEQ                FNIEKGRLVQQQR KIM
Sbjct: 3   ISDNDVQKQLRHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQQQRQKIM 54


>Z81071-2|CAB03012.1|  618|Caenorhabditis elegans Hypothetical
           protein F28F8.2 protein.
          Length = 618

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 328 LHQVHYVRDLHALSVPSDELG 266
           LH++ YV D H + VP D  G
Sbjct: 515 LHKLDYVADAHVVGVPDDRYG 535


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,759,765
Number of Sequences: 27780
Number of extensions: 287573
Number of successful extensions: 840
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)