Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0333
(557 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51503| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.64
SB_25293| Best HMM Match : DUF1665 (HMM E-Value=0.098) 30 1.1
SB_40551| Best HMM Match : Extensin_2 (HMM E-Value=0.076) 30 1.5
SB_3972| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_55828| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_18359| Best HMM Match : UPF0171 (HMM E-Value=1e-09) 29 3.4
SB_7859| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_39714| Best HMM Match : Lipin_N (HMM E-Value=0) 27 7.9
SB_53084| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
SB_21529| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
>SB_51503| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 335
Score = 31.1 bits (67), Expect = 0.64
Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Frame = -1
Query: 395 DNRGGVDGSNDDGLRDNGALFSLFD----DNNGLGLDFSG-SNRNTSGDVD 258
D+ GG DGS+DD + DNG+ + D DN+G G D G N + GD D
Sbjct: 259 DDDGGDDGSDDD-VGDNGSDDGIDDVDSGDNDGDGSDGGGDDNGDDDGDND 308
Score = 27.5 bits (58), Expect = 7.9
Identities = 17/45 (37%), Positives = 20/45 (44%)
Frame = -1
Query: 395 DNRGGVDGSNDDGLRDNGALFSLFDDNNGLGLDFSGSNRNTSGDV 261
DN G G NDDG D+G DD G D G + + DV
Sbjct: 229 DNDDG--GDNDDGSDDDGGDDGSDDDGGDDGSDDDGGDDGSDDDV 271
>SB_25293| Best HMM Match : DUF1665 (HMM E-Value=0.098)
Length = 1450
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = -1
Query: 368 NDDGLRDNGALFSLFDDNNGLGLDFSGSNRNTSGDVDVTMSC 243
NDDG D G++F DD+NG S+ + GDV V ++C
Sbjct: 894 NDDGGLDGGSVFDAVDDDNG------NSDNDAGGDV-VIITC 928
>SB_40551| Best HMM Match : Extensin_2 (HMM E-Value=0.076)
Length = 1269
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = -1
Query: 395 DNRGGVDGSNDDGLRDNGALFSLFDDNNGL-GLDFSGSNRNTSGDVDV 255
DNRG + RD G + +D N G ++ G+NRN + D V
Sbjct: 63 DNRGNRASQDSGNRRDRGQTYHSREDRNDYRGDNYRGNNRNDNRDTRV 110
>SB_3972| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = -1
Query: 395 DNRGGVDGSNDDGLRDNGALFSLFDDNNGLGLDFSGSNRN 276
DN G SND+G +NG+ DDNNG G G++ N
Sbjct: 125 DNNNGAC-SNDNGNDNNGSYHYGNDDNNGAGSYEDGNDDN 163
Score = 29.1 bits (62), Expect = 2.6
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -1
Query: 395 DNRGGVDGSNDDGLRD-NGALFSLFDDNNGLGLDFSGSNRNTSGDVD 258
D+ G +DDG D NGA + DDNNG G + + N N +G+ D
Sbjct: 77 DDNNGTGSYDDDGDDDNNGAGSNDNDDNNGDGSNDNDDN-NGNGNYD 122
>SB_55828| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 295
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = -1
Query: 395 DNRGGVDGSNDDGLRDNGAL--FSLFDDNNGL-GLDFSGSNRNTSG 267
DN GV +DDG G+ D+NNG+ D+ GS N G
Sbjct: 148 DNNNGVSSDDDDGSGSGGSSDDGGSGDNNNGVSSSDYGGSGDNDDG 193
>SB_18359| Best HMM Match : UPF0171 (HMM E-Value=1e-09)
Length = 557
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = -1
Query: 374 GSNDDGLRDNGALFSLFDDNNGLGLDFSGSNRNTSGDVDVT 252
GS+D+G D+G DD+NG D G + N GD D++
Sbjct: 519 GSDDNGGDDDGGDDDGDDDDNG---DIDGDDDNGDGDYDLS 556
>SB_7859| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 257
Score = 28.7 bits (61), Expect = 3.4
Identities = 20/47 (42%), Positives = 25/47 (53%)
Frame = -1
Query: 395 DNRGGVDGSNDDGLRDNGALFSLFDDNNGLGLDFSGSNRNTSGDVDV 255
D G DG +DDG+ DNG + + DD G D G N +GDV V
Sbjct: 202 DGDGDDDGGDDDGVVDNGDV--VVDDGGG---DDDGGGVN-NGDVVV 242
>SB_39714| Best HMM Match : Lipin_N (HMM E-Value=0)
Length = 1311
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -1
Query: 392 NRGGVDGSNDDGLRDNGALFSLFDDNNGLGLDFSGSNRNTSGD 264
N GVDG +DD D+G+ DD +G G+ GS D
Sbjct: 1071 NGSGVDGDDDDVDGDDGSGSVDGDDGSGGGVGDDGSGVGDDDD 1113
>SB_53084| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 936
Score = 27.5 bits (58), Expect = 7.9
Identities = 20/51 (39%), Positives = 22/51 (43%)
Frame = -1
Query: 395 DNRGGVDGSNDDGLRDNGALFSLFDDNNGLGLDFSGSNRNTSGDVDVTMSC 243
D GGVD D G D+G DD+ G G D S GD DV C
Sbjct: 505 DGDGGVDDDGDGGGDDDGD--GGGDDDVGCGCDESSGG---GGDDDVGCGC 550
>SB_21529| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 367
Score = 27.5 bits (58), Expect = 7.9
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -3
Query: 264 R*RYDELHKRRGTGGNSRSNDNRSGLHGSSHYTT 163
R RY L +R G N+ +N+N + + +++ TT
Sbjct: 211 RIRYSALFRRHGFNNNNNNNNNNNNKNNNNNNTT 244
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,883,345
Number of Sequences: 59808
Number of extensions: 149734
Number of successful extensions: 635
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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