Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0330
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   7.3  
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo...    25   7.3  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    25   9.7  

>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 116  QPSQWKQQLCWYLGLGCR 169
            QP QW Q+LC    L CR
Sbjct: 1785 QPFQWFQELCVKAFLACR 1802


>SPBC800.09 |sum2||G2/M transition checkpoint protein
           Sum2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 486 ILARIQELKDVTLAKPAG*PLWQPLSDPND 397
           I+ R  ++KD+ + +PA  P   P+  PND
Sbjct: 64  IVFRGSDVKDLRIEEPATTPSAPPVQPPND 93


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 514 SLAFVSRHLNSSPDPGVERCDSSEAGRVASLA 419
           S++  S+ +NSSP P ++   SS   R  +L+
Sbjct: 567 SISSSSKSINSSPSPSIQLSVSSSISRDKNLS 598


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,526,127
Number of Sequences: 5004
Number of extensions: 22632
Number of successful extensions: 76
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)