Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0330
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0003 - 24867053-24867145,24867264-24867437,24867673-248677...    30   1.4  
11_08_0081 - 28216179-28216381,28216590-28216657,28217131-282172...    27   9.9  
10_02_0096 - 5248369-5248479,5248562-5248604,5249093-5249178,525...    27   9.9  
07_03_1691 - 28726307-28726323,28726588-28726953,28727483-287275...    27   9.9  

>02_05_0003 -
           24867053-24867145,24867264-24867437,24867673-24867735,
           24868108-24868198,24869579-24869673,24870471-24870668,
           24871475-24871648,24872335-24872439,24872645-24872737,
           24873688-24873690,24874776-24874844,24875208-24875265,
           24875810-24875918,24876603-24876714,24877992-24878204,
           24878214-24878546
          Length = 660

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 170 LREDLRCCFGSQQPTKTPSEPPGHHQRRRARTYGNS 277
           LR  +RCC  +   T  P  PP   +RRR+ +  +S
Sbjct: 31  LRPHVRCCSPAAASTTKPPPPPPQDRRRRSASSSSS 66


>11_08_0081 -
           28216179-28216381,28216590-28216657,28217131-28217298,
           28217370-28217436,28217509-28217576,28218256-28218420,
           28218490-28218556,28218629-28218696,28219855-28219992,
           28220189-28220353,28221227-28221304,28221380-28221532,
           28222753-28222823,28223077-28223203,28223306-28223565,
           28223679-28223842,28224287-28224450,28225873-28226159
          Length = 826

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 212 TKTPSEPPGHHQRRRARTY 268
           T +P +P GH ++R+ R+Y
Sbjct: 502 TNSPGQPKGHDEKRKRRSY 520


>10_02_0096 -
           5248369-5248479,5248562-5248604,5249093-5249178,
           5250089-5250153,5252539-5252747,5253077-5253188,
           5253271-5253322,5254593-5254685,5254997-5255146,
           5255223-5255327,5255858-5255891,5256145-5256281,
           5257691-5257819,5257899-5257977,5258081-5258156,
           5258981-5259070,5259181-5259259,5259397-5259431,
           5260722-5260811,5260913-5261027
          Length = 629

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +2

Query: 200 SQQPTKTPSEPPGHHQRRRARTYGNSVIIGSTLCVSGANGRS 325
           SQQ   T     GH       TY ++ +IG T   SG+  RS
Sbjct: 493 SQQKASTSRRTGGHTSNLLPETYDDTEVIGLTANGSGSRVRS 534


>07_03_1691 -
           28726307-28726323,28726588-28726953,28727483-28727567,
           28728255-28728387,28729793-28730328
          Length = 378

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 197 GSQQPTKTPSEPPGHHQRRRA 259
           G   PT  P  PP HH+R R+
Sbjct: 38  GGAGPTPPPPPPPPHHRRARS 58


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,991,510
Number of Sequences: 37544
Number of extensions: 177615
Number of successful extensions: 608
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)