Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0330
(548 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10327| Best HMM Match : Trypsin (HMM E-Value=0) 31 0.82
SB_38755| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_14704| Best HMM Match : Mak16 (HMM E-Value=9.3) 30 1.4
SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_11021| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_1442| Best HMM Match : SRCR (HMM E-Value=0) 29 3.3
SB_28576| Best HMM Match : Equine_IAV_S2 (HMM E-Value=2.8) 28 4.4
SB_21520| Best HMM Match : Trypsin (HMM E-Value=0) 28 4.4
SB_32032| Best HMM Match : PAN (HMM E-Value=0.029) 28 5.8
SB_45863| Best HMM Match : Peptidase_M10 (HMM E-Value=9e-31) 28 5.8
SB_41436| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
>SB_10327| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 865
Score = 30.7 bits (66), Expect = 0.82
Identities = 20/73 (27%), Positives = 32/73 (43%)
Frame = +2
Query: 263 TYGNSVIIGSTLCVSGANGRSTCXXXXXXXXXXXXXXXRQLIGITSFGSDRGCQRGYPAG 442
T G +V S +C GA G S C L G+ S+ + C +
Sbjct: 448 TNGATVDENSMICAGGA-GSSACNGDSGGPLQCLENERWVLRGVASWVTAETCPGNTFSV 506
Query: 443 FARVTSFNSWIRA 481
+ARV+S+++WI +
Sbjct: 507 YARVSSYSNWIES 519
>SB_38755| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 471
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/27 (51%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +3
Query: 45 NNLNNDVAIINHNHVG-FNNNIQRINL 122
NN+NN+ IIN+N++ NNNI IN+
Sbjct: 409 NNINNNNIIINNNNIIIINNNIININI 435
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 51 LNNDVAIINHNHVGFNNNIQRINL 122
+NN+ IIN+N++ NNNI N+
Sbjct: 393 INNNNIIINNNNIIINNNINNNNI 416
>SB_14704| Best HMM Match : Mak16 (HMM E-Value=9.3)
Length = 189
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 21 HLHGSYNMNNLNNDVAIINHNHVGFNNNIQRIN 119
+++ + N NN NN++ IN+N+ NNNI N
Sbjct: 92 NINNNNNNNNNNNNINNINNNNNNNNNNINNNN 124
>SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1906
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +3
Query: 12 SSVHLHGSYNMNNLNNDVAIINHNHVGFNNN 104
+S++ + N N++NN+ + IN+N+ NNN
Sbjct: 1763 NSINNRNNTNNNSINNNNSSINNNNSSINNN 1793
>SB_11021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1033
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 383 LIGITSFGSDRGCQRGYPAGFARVTSFNSWIRARI 487
L G S+G+ R C Y F RV+S+ +WI +I
Sbjct: 692 LHGAVSYGA-RWCPTDYYTVFTRVSSYVAWINGKI 725
>SB_1442| Best HMM Match : SRCR (HMM E-Value=0)
Length = 2103
Score = 28.7 bits (61), Expect = 3.3
Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 2/83 (2%)
Frame = +2
Query: 245 QRRRARTYGNSVIIGSTLCVSGANG--RSTCXXXXXXXXXXXXXXXRQLIGITSFGSDRG 418
QR Y N I + + +G G + TC L+G+TS+ +
Sbjct: 1940 QRACEEQYRNLKPITARMRCAGIYGTPKGTCKGDSGGPLVCESKGRWVLMGVTSWSYNGC 1999
Query: 419 CQRGYPAGFARVTSFNSWIRARI 487
GY +A V F WIR +
Sbjct: 2000 ADSGYAGVYADVVYFKDWIRQTV 2022
>SB_28576| Best HMM Match : Equine_IAV_S2 (HMM E-Value=2.8)
Length = 213
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3
Query: 33 SYNMNNLNNDVAIINHNHVGFNNN 104
S N NN+NN++ I N+N+ NNN
Sbjct: 126 SDNNNNINNNIIINNNNNNDENNN 149
>SB_21520| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 800
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/62 (24%), Positives = 24/62 (38%)
Frame = +2
Query: 290 STLCVSGANGRSTCXXXXXXXXXXXXXXXRQLIGITSFGSDRGCQRGYPAGFARVTSFNS 469
+T+ +G +G S C L G S+G+ C +AR++S
Sbjct: 481 TTMICAGGSGSSACSGDSGGPLVCHEGGTWVLRGAVSWGTSHSCPGRMFVAYARISSHID 540
Query: 470 WI 475
WI
Sbjct: 541 WI 542
>SB_32032| Best HMM Match : PAN (HMM E-Value=0.029)
Length = 610
Score = 27.9 bits (59), Expect = 5.8
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +2
Query: 89 WLQQQHPAHQPSQWKQQLCWYLGLGCRLR 175
W+ + HP H+ ++LC+ +G C R
Sbjct: 457 WMNESHPRHEDGIVSRRLCYRVGGDCCAR 485
>SB_45863| Best HMM Match : Peptidase_M10 (HMM E-Value=9e-31)
Length = 273
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 39 NMNNLNNDVAIINHNHVGFNNN 104
N NN+NN+ I N+N++ NNN
Sbjct: 238 NNNNINNNNNINNNNNINNNNN 259
>SB_41436| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 151
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 21 HLHGSYNMNNLNNDVAIINHNHVGFNNNIQR 113
H +G NN NN+ IIN+N+ NNI++
Sbjct: 24 HNNGHNITNNNNNNNIIINNNNDNSKNNIKK 54
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,855,094
Number of Sequences: 59808
Number of extensions: 205095
Number of successful extensions: 1665
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1539
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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