Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0330
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14710-5|AAK84538.1|  277|Caenorhabditis elegans Hypothetical pr...    28   5.1  
U42436-6|AAM15564.1|  615|Caenorhabditis elegans Not-like (yeast...    27   6.7  
U42436-5|AAF99894.2|  796|Caenorhabditis elegans Not-like (yeast...    27   6.7  
Z46996-5|CAA87096.1|  268|Caenorhabditis elegans Hypothetical pr...    27   8.9  
U50197-2|AAA91255.2|  624|Caenorhabditis elegans Hypothetical pr...    27   8.9  
U39855-2|AAA81081.2|  355|Caenorhabditis elegans G protein, alph...    27   8.9  
AY008134-1|AAG32087.1|  355|Caenorhabditis elegans heterotrimeri...    27   8.9  
AF003390-3|AAB54272.1| 1308|Caenorhabditis elegans Hypothetical ...    27   8.9  

>L14710-5|AAK84538.1|  277|Caenorhabditis elegans Hypothetical
           protein K02D10.5 protein.
          Length = 277

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 203 QQPTKTPSEPPGHHQRRRARTYGNSVIIGSTLCVSGANGRST 328
           Q+PT+TP+ P      R + T  N    G +   SG +G+ T
Sbjct: 123 QEPTETPTVPQSKSASRLSETATNLSSGGGSATFSGPSGQRT 164


>U42436-6|AAM15564.1|  615|Caenorhabditis elegans Not-like (yeast
           ccr4/not complexcomponent) protein 4, isoform b protein.
          Length = 615

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = +2

Query: 95  QQQHPAHQPSQWKQQLCWYLGLGCRLREDL---RCCFGSQQP 211
           QQQH A Q +Q  QQ   Y G+   +  D+   R  FG   P
Sbjct: 468 QQQHQAQQQAQQHQQQQMYAGINSYMYNDMLMPRVPFGMAPP 509


>U42436-5|AAF99894.2|  796|Caenorhabditis elegans Not-like (yeast
           ccr4/not complexcomponent) protein 4, isoform a protein.
          Length = 796

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = +2

Query: 95  QQQHPAHQPSQWKQQLCWYLGLGCRLREDL---RCCFGSQQP 211
           QQQH A Q +Q  QQ   Y G+   +  D+   R  FG   P
Sbjct: 649 QQQHQAQQQAQQHQQQQMYAGINSYMYNDMLMPRVPFGMAPP 690


>Z46996-5|CAA87096.1|  268|Caenorhabditis elegans Hypothetical
           protein C34C12.5 protein.
          Length = 268

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 155 GLGCRLR-EDLRCCFGSQQPTKTPSEPPGHHQRRRAR 262
           G+   +R +D R  FG Q+P+ TP  P  + +++ +R
Sbjct: 226 GVWAHIRTDDYRYFFGRQEPSSTPVPPKRNKEKKVSR 262


>U50197-2|AAA91255.2|  624|Caenorhabditis elegans Hypothetical
           protein F25E2.2 protein.
          Length = 624

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 89  WLQQQHPAHQPSQWKQQLCWYLGLGCRLREDLRC 190
           +L++Q PAHQ  Q K+Q C      C      +C
Sbjct: 530 FLEEQEPAHQKEQNKEQDCPINSKSCEKCSHSKC 563


>U39855-2|AAA81081.2|  355|Caenorhabditis elegans G protein, alpha
           subunit protein 12 protein.
          Length = 355

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +2

Query: 188 CCFGSQQPTKTPSEPPGHHQRRRARTYGNSVIIGSTLCVSGANGRST 328
           CCFG +       E   H +R+  R   N +++G     SG +G+ST
Sbjct: 3   CCFGKKDERTKTIEKELHKERKIMRRQINLLLLG-----SGESGKST 44


>AY008134-1|AAG32087.1|  355|Caenorhabditis elegans heterotrimeric G
           protein alphasubunit protein.
          Length = 355

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +2

Query: 188 CCFGSQQPTKTPSEPPGHHQRRRARTYGNSVIIGSTLCVSGANGRST 328
           CCFG +       E   H +R+  R   N +++G     SG +G+ST
Sbjct: 3   CCFGKKDERTKTIEKELHKERKIMRRQINLLLLG-----SGESGKST 44


>AF003390-3|AAB54272.1| 1308|Caenorhabditis elegans Hypothetical
           protein R155.2 protein.
          Length = 1308

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 24  LHGSYNMNNLNNDVAIINHNHVGFNNNIQRIN 119
           LH S N + L+N   I+N     F  ++Q+IN
Sbjct: 501 LHDSMNQHTLDNMSQIVNVTDAKFLESVQKIN 532


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,660,315
Number of Sequences: 27780
Number of extensions: 135473
Number of successful extensions: 424
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)