Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0330
         (548 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02460.1 68417.m00333 DNA mismatch repair protein, putative s...    28   4.7  

>At4g02460.1 68417.m00333 DNA mismatch repair protein, putative
           similar to SP|P54278 PMS1 protein homolog 2 (DNA
           mismatch repair protein PMS2) {Homo sapiens}; contains
           Pfam profiles PF02518: ATPase, histidine kinase-, DNA
           gyrase B-, and HSP90-like domain protein, PF01119: DNA
           mismatch repair protein, C-terminal domain
          Length = 923

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 215 KTPSEPPGHHQRRRARTYGNSVIIG 289
           + PS PPG H R RA  Y  ++  G
Sbjct: 784 ENPSAPPGKHFRLRAIPYSKNITFG 808


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,318,574
Number of Sequences: 28952
Number of extensions: 129218
Number of successful extensions: 347
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)