Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0328
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    28   1.4  
SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit T...    28   1.4  

>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1616

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = -2

Query: 374  WHVLLVRCSHPCRNSPQRIRDG*QQSEHKIFHRAHCDGKISDN--ATVCRIV 225
            W +LLV  +  C NS   +R+G  Q   +IF+ + C  K+  N  A+ C++V
Sbjct: 1024 WIMLLVHLADLCENSWASVRNGAAQILFRIFN-SQC-SKLGTNAWASCCQLV 1073


>SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit
           Tfb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 477

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 435 RVFLLICSDGELPFKAAVYLTATSTARTHCDQ-QRKLQGTVQ 557
           RVF+++  +GE P     + T T  AR +CD    +L+  +Q
Sbjct: 3   RVFIVV-KEGEDPTSLVFHFTGTPNARENCDMITNELRNAIQ 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,992,595
Number of Sequences: 5004
Number of extensions: 66066
Number of successful extensions: 198
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)