Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0328
         (684 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43527| Best HMM Match : Trypsin (HMM E-Value=0)                     30   2.0  
SB_37182| Best HMM Match : DUF225 (HMM E-Value=1)                      29   2.7  
SB_26948| Best HMM Match : LIM (HMM E-Value=2.3e-39)                   28   6.1  
SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_56319| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_48258| Best HMM Match : Kelch_1 (HMM E-Value=0)                     28   8.1  
SB_43991| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_30797| Best HMM Match : Notch (HMM E-Value=2.4e-07)                 28   8.1  
SB_5845| Best HMM Match : Ribosomal_S27 (HMM E-Value=8.3)              28   8.1  

>SB_43527| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 366

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +2

Query: 311 HPEFSEENYDKDVSIVRVTHAIHF 382
           HP +S ++YD D++++R+   + F
Sbjct: 199 HPHYSPDSYDSDIALIRLAQPVTF 222


>SB_37182| Best HMM Match : DUF225 (HMM E-Value=1)
          Length = 1282

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = +1

Query: 178 PTTTTFQLLPVSMENSTILHTVALSLIFPSQ*AR*N---ILCSLCC*PSRIL*GELRQGC 348
           P+     ++P++     + H V +S+ FPS+ A  +   I CS  C P R+L       C
Sbjct: 747 PSRAHVDVIPIACSCRCVPHHVLMSMCFPSR-AHVDVFPITCSCRCVPHRVLMSMCSPSC 805

Query: 349 EH 354
            H
Sbjct: 806 AH 807


>SB_26948| Best HMM Match : LIM (HMM E-Value=2.3e-39)
          Length = 351

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -3

Query: 646 HPSQYCRSRGHQPGPNRRRICYQSRRDHDPCTV 548
           +PS+ C +      P  +++ YQS+  HD C +
Sbjct: 171 NPSKVCAACNGDFAPGEKKVGYQSKTFHDKCFI 203


>SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1465

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 523  VTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTDLG 645
            V N   C++ Y+     VT N  CAG  +   RD  N D G
Sbjct: 1321 VVNHNACKKAYENETWPVTSNMLCAG-YKNKSRDSCNRDSG 1360


>SB_56319| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 180

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
 Frame = +2

Query: 215 WRILRS---CIPSHYR*SSRRSEPGE 283
           WRILR+   C   HYR + R  EPGE
Sbjct: 99  WRILRTKTTCPVRHYRFNRRVQEPGE 124


>SB_48258| Best HMM Match : Kelch_1 (HMM E-Value=0)
          Length = 473

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 105 SLVQIEVFLPILNQWFQQCAGIVLTNYHYLSTATCFHGEFY 227
           +LV +E + P  N+W ++    +LT   Y STA    G+ Y
Sbjct: 111 NLVSMERYDPSTNEWEEEAVAPMLTARKYFSTAV-LDGKLY 150


>SB_43991| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1149

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = -3

Query: 508 VEVAVRYTAALNGSSPSEQI-NKNTLGYYDTLLDNSTLLDVWAEVDGMCYSYDAHILVVI 332
           +++ V Y AA+   S   Q  N+N L Y +   D    +   A +  M  SY+  +  + 
Sbjct: 303 MKIKVNYVAAVQDESTYSQFYNENNLKYEEEFTDVLENIKTRARIVIMVTSYNMAVEGMH 362

Query: 331 LLREFGMVNSK 299
           L +  G++N +
Sbjct: 363 LAKNRGLINGE 373


>SB_30797| Best HMM Match : Notch (HMM E-Value=2.4e-07)
          Length = 778

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/60 (21%), Positives = 25/60 (41%)
 Frame = -1

Query: 615 TSPDQTGAEFVISHDAIMTLVLFPAVFFVGHNEFELWRLPSDTLPP*TVVPHPSRSTKIP 436
           +S +QT     +     + L ++P +          W++P+ TLP  T +       K+P
Sbjct: 213 SSDNQTTLVPTVVKPEFLPLTVYPVIINDNDRAINYWQIPNSTLPRPTWIALSQEEYKVP 272


>SB_5845| Best HMM Match : Ribosomal_S27 (HMM E-Value=8.3)
          Length = 265

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
 Frame = +2

Query: 215 WRILRS---CIPSHYR*SSRRSEPGE 283
           WRILR+   C   HYR + R  EPGE
Sbjct: 63  WRILRTKTKCPVRHYRFNRRVQEPGE 88


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,543,853
Number of Sequences: 59808
Number of extensions: 552418
Number of successful extensions: 1408
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1406
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)