Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0328
         (684 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83238-2|CAB05793.1|  343|Caenorhabditis elegans Hypothetical pr...    32   0.44 
Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical pr...    32   0.44 
Z70681-1|CAA94580.1|  307|Caenorhabditis elegans Hypothetical pr...    31   0.77 
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    31   1.0  
Z82060-2|CAB04882.1|  421|Caenorhabditis elegans Hypothetical pr...    30   1.3  
U80837-5|AAB37901.1|  455|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AF016668-7|AAB66091.3|  471|Caenorhabditis elegans Hypothetical ...    30   1.8  
U97593-6|AAB52879.2|  925|Caenorhabditis elegans Prion-like-(q/n...    29   3.1  
U97593-5|AAB52880.1| 1175|Caenorhabditis elegans Prion-like-(q/n...    29   3.1  
U97550-1|AAK18983.2| 1065|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AC024751-9|AAK21508.2|  677|Caenorhabditis elegans Pif1p dna hel...    28   5.4  
AB015041-1|BAA28677.1|  677|Caenorhabditis elegans PIF1 protein.       28   5.4  
Z74028-6|CAI91174.1|  674|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z74028-5|CAA98427.1|  677|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AC024756-4|AAX88819.1|  639|Caenorhabditis elegans Hypothetical ...    27   9.4  
AC006637-1|AAK85476.2|  342|Caenorhabditis elegans Hypothetical ...    27   9.4  

>Z83238-2|CAB05793.1|  343|Caenorhabditis elegans Hypothetical
           protein T08G3.2 protein.
          Length = 343

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 21/77 (27%), Positives = 35/77 (45%)
 Frame = +3

Query: 105 SLVQIEVFLPILNQWFQQCAGIVLTNYHYLSTATCFHGEFYDPAYRRIIADLPVAVSPVK 284
           S V + ++LP+LN  F    GI L  +        F   +    YRR + D+   ++P K
Sbjct: 266 SPVFLVIYLPLLNLDFSLPMGIFLGIFSLYPALDAFILMYVVTDYRRALKDVLKVLNPFK 325

Query: 285 YLMFTLLLTIPNSLRRI 335
            +  + L+ IP   + I
Sbjct: 326 KVTVSTLVVIPGQAQFI 342


>Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical
           protein M195.2 protein.
          Length = 419

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 346 CEHRTSNTCHPLRPKHPAGCYYPTRCRNTPGYFC 447
           C+   +N+C  L P+   GC  PT CRNT    C
Sbjct: 275 CQTGCANSCAQLSPQPTEGC--PTNCRNTCNEVC 306


>Z70681-1|CAA94580.1|  307|Caenorhabditis elegans Hypothetical
           protein C30F2.1 protein.
          Length = 307

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +1

Query: 370 CHPLRPKHPAGCYYPTRCRNTPGYFC*SARMG--NYRS--RRQCI*RQ 501
           C P+RPK P G   P  CR  PG      R G  NY +   ++CI R+
Sbjct: 102 CEPIRPKCPPGPPGPPGCRGEPGPSGLPGRRGINNYETLPLKKCIWRE 149


>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
            lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = +1

Query: 346  CEHRTS--NT-CHPLRPKHPAGCYYPTRCRNTPGY 441
            CE   +  NT C P+  K P  C+   RC +TPGY
Sbjct: 1863 CEQNAAAHNTDCSPICQKQPNWCHNGGRCLDTPGY 1897


>Z82060-2|CAB04882.1|  421|Caenorhabditis elegans Hypothetical
           protein T27F6.2 protein.
          Length = 421

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 22/86 (25%), Positives = 32/86 (37%)
 Frame = +1

Query: 394 PAGCYYPTRCRNTPGYFC*SARMGNYRSRRQCI*RQPPQLELIVTNKENCREQYKGHDRV 573
           PAG ++ T C N PGY+    + G      QC    P  +     N  NC       D +
Sbjct: 266 PAGFWFSTNC-NNPGYYICKRQAG-----VQCSAAPPATVTPSPANPSNCNAGRLMSDGI 319

Query: 574 VTDNKFCAGLVRAGGRDYDNTDLGAL 651
           +T   F           Y  + LG++
Sbjct: 320 ITSPNFPQNYFNNANCAYQISTLGSM 345


>U80837-5|AAB37901.1|  455|Caenorhabditis elegans Hypothetical
           protein F07E5.1 protein.
          Length = 455

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/27 (55%), Positives = 19/27 (70%)
 Frame = +1

Query: 124 YSYPS*INGSNSALVLFSPTTTTFQLL 204
           YSYPS I   +S +V+ + TTTTF LL
Sbjct: 75  YSYPSPIVLEHSFVVMTTTTTTTFSLL 101


>AF016668-7|AAB66091.3|  471|Caenorhabditis elegans Hypothetical
           protein F36H9.1 protein.
          Length = 471

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
 Frame = -3

Query: 640 SQYCRSRGHQPGPNRRRICYQSRRDHDPCTVPC-SFLCWSQ*VRAVEVAVRYTAALNGSS 464
           +++C    +   P    ICY S+RD    T  C    C+        V  +  +++N  +
Sbjct: 382 TEFCNREQNIEVPLGNVICYLSKRDQSERTKYCIGQKCYLFYEDINNVKEKGCSSVNDEA 441

Query: 463 PSEQINKNTLGYY---DTLLDNSTLL 395
           P E+     LGYY   D  L N  LL
Sbjct: 442 PEEEKRLGKLGYYTYCDENLCNGDLL 467


>U97593-6|AAB52879.2|  925|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
           isoform c protein.
          Length = 925

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = -3

Query: 649 GHPSQYCRSRGHQPGPNRRRICYQSRRDHDPCTV 548
           GH       RGH P P R R  Y +   HDPC V
Sbjct: 222 GHVPGDANYRGHGPDPPRLRPKY-TADSHDPCNV 254


>U97593-5|AAB52880.1| 1175|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
           isoform a protein.
          Length = 1175

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = -3

Query: 649 GHPSQYCRSRGHQPGPNRRRICYQSRRDHDPCTV 548
           GH       RGH P P R R  Y +   HDPC V
Sbjct: 341 GHVPGDANYRGHGPDPPRLRPKY-TADSHDPCNV 373


>U97550-1|AAK18983.2| 1065|Caenorhabditis elegans Hypothetical protein
            T20F7.5 protein.
          Length = 1065

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 20/62 (32%), Positives = 31/62 (50%)
 Frame = -2

Query: 215  METGSS*KVVVVGENNTSALLEPLIQDG*EYFNLDQAGMLANRHRSTEIASSAAADGSEH 36
            +E  SS  V    E+     +EP++++  +Y +LD   M + RHRS +I S    D   H
Sbjct: 907  LERKSSSTVPEKNEDELRVEIEPIMKELSDYESLD---MRSIRHRSDKIDSYFDLDSEFH 963

Query: 35   SY 30
             Y
Sbjct: 964  DY 965


>AC024751-9|AAK21508.2|  677|Caenorhabditis elegans Pif1p dna
           helicase (yeast) homologprotein 1 protein.
          Length = 677

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = -3

Query: 313 MVNSKVNIRYFTGLTATGRSAIMRR 239
           ++NS+ ++ +FTG   TG+S I+RR
Sbjct: 257 VINSRTSV-FFTGSAGTGKSVILRR 280


>AB015041-1|BAA28677.1|  677|Caenorhabditis elegans PIF1 protein.
          Length = 677

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = -3

Query: 313 MVNSKVNIRYFTGLTATGRSAIMRR 239
           ++NS+ ++ +FTG   TG+S I+RR
Sbjct: 257 VINSRTSV-FFTGSAGTGKSVILRR 280


>Z74028-6|CAI91174.1|  674|Caenorhabditis elegans Hypothetical
           protein C14C10.3b protein.
          Length = 674

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = -2

Query: 128 EYFNLDQAGMLANRHRSTEIASSAAADGSEHSY 30
           E F+LD  G+L+ + +S E  SSA   G+EH++
Sbjct: 57  EVFSLDDFGLLSMKSQSLESISSA---GNEHNF 86


>Z74028-5|CAA98427.1|  677|Caenorhabditis elegans Hypothetical
           protein C14C10.3a protein.
          Length = 677

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = -2

Query: 128 EYFNLDQAGMLANRHRSTEIASSAAADGSEHSY 30
           E F+LD  G+L+ + +S E  SSA   G+EH++
Sbjct: 57  EVFSLDDFGLLSMKSQSLESISSA---GNEHNF 86


>AC024756-4|AAX88819.1|  639|Caenorhabditis elegans Hypothetical
           protein Y34D9A.3 protein.
          Length = 639

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
 Frame = -3

Query: 418 LLDNSTLLDVWAEVDGMCYSYDAHILVVILLREFGMVN--SKVNIRYFTGLTATGRSAIM 245
           + D S    +W   + +    D H+L+  L RE    N    + I  F   TA G+  ++
Sbjct: 26  VFDESLFTSIWKSPERLSNETDFHLLLTALSREIAAENYQEPLLILKFMKKTAIGQDEVI 85

Query: 244 RR 239
            R
Sbjct: 86  NR 87


>AC006637-1|AAK85476.2|  342|Caenorhabditis elegans Hypothetical
           protein F41B4.1 protein.
          Length = 342

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 574 VTDNKFCAGLVRAGGRDYDNTDLGALPSSKCAS 672
           ++DNKF   L++AG     NT + + P S+  S
Sbjct: 136 LSDNKFIENLIKAGQVSIGNTGMISQPGSRVGS 168


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,944,955
Number of Sequences: 27780
Number of extensions: 389580
Number of successful extensions: 1065
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)