Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0327
         (596 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0C5V7 Cluster: Chromosome undetermined scaffold_150, w...    35   1.3  
UniRef50_Q7RE41 Cluster: Arabinogalactan protein; n=4; Plasmodiu...    33   3.9  
UniRef50_Q4YGZ3 Cluster: Putative uncharacterized protein; n=1; ...    33   5.1  
UniRef50_Q12244 Cluster: Uncharacterized transcriptional regulat...    33   5.1  
UniRef50_Q4A5Q0 Cluster: Putative ABC transporter, ATP-binding p...    32   8.9  

>UniRef50_A0C5V7 Cluster: Chromosome undetermined scaffold_150,
           whole genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_150,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 912

 Score = 35.1 bits (77), Expect = 1.3
 Identities = 17/44 (38%), Positives = 26/44 (59%)
 Frame = +1

Query: 274 ELMKNIECKTVKIRLVFISQISTKFDIYNTKKYRFQMLPCSFDD 405
           +L K I C+ +KI L+    I T+  + N KK+ FQ L  SF++
Sbjct: 514 DLNKTIRCQVIKIELMQYQIIYTQSILQNGKKFNFQELQNSFEE 557


>UniRef50_Q7RE41 Cluster: Arabinogalactan protein; n=4;
           Plasmodium|Rep: Arabinogalactan protein - Plasmodium
           yoelii yoelii
          Length = 447

 Score = 33.5 bits (73), Expect = 3.9
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +1

Query: 271 NELMKNIECKTVKIRLVFISQISTKFDIYNTKKYRF 378
           N  + N++C T K  L F+ Q+ST +DIY    Y F
Sbjct: 33  NSTVFNLKCSTCKKNLTFLFQLSTPYDIYIRILYIF 68


>UniRef50_Q4YGZ3 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium berghei|Rep: Putative uncharacterized protein
           - Plasmodium berghei
          Length = 106

 Score = 33.1 bits (72), Expect = 5.1
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
 Frame = -3

Query: 441 FKYISFHICNVMIIKGTWQHLESIFFSIINIELRGNLRYKNQTYFHCFTFN-VFHQFITL 265
           +++I+ HI  + I KG ++H+    + I  I L+    Y    YFH +  + ++H  I +
Sbjct: 16  YRFIN-HILYIYI-KGLFKHIACFIYMIYYIHLQPFYFYMYNFYFHMYNVHLLYHIHIYI 73

Query: 264 YT*DSCFRVGGVIYVVD 214
           Y     F +   IYVVD
Sbjct: 74  YVNFRIF-ICSYIYVVD 89


>UniRef50_Q12244 Cluster: Uncharacterized transcriptional regulatory
           protein YLL054C; n=2; Saccharomyces cerevisiae|Rep:
           Uncharacterized transcriptional regulatory protein
           YLL054C - Saccharomyces cerevisiae (Baker's yeast)
          Length = 769

 Score = 33.1 bits (72), Expect = 5.1
 Identities = 22/80 (27%), Positives = 37/80 (46%)
 Frame = -3

Query: 444 TFKYISFHICNVMIIKGTWQHLESIFFSIINIELRGNLRYKNQTYFHCFTFNVFHQFITL 265
           TF+     I NV+    T    +S+     N   +  L YK  TY+H FTF     ++TL
Sbjct: 549 TFEENETFIANVISYTCTMNIYDSLSLHFENQCFKNALEYK--TYYHRFTFTAIQDYLTL 606

Query: 264 YT*DSCFRVGGVIYVVDLYG 205
               S +  G ++++ + +G
Sbjct: 607 LKLISEYFNGSLLHLREPFG 626


>UniRef50_Q4A5Q0 Cluster: Putative ABC transporter, ATP-binding
           protein; n=2; Mycoplasma synoviae 53|Rep: Putative ABC
           transporter, ATP-binding protein - Mycoplasma synoviae
           (strain 53)
          Length = 592

 Score = 32.3 bits (70), Expect = 8.9
 Identities = 23/67 (34%), Positives = 35/67 (52%)
 Frame = -3

Query: 468 LHKLNLKITFKYISFHICNVMIIKGTWQHLESIFFSIINIELRGNLRYKNQTYFHCFTFN 289
           L KL+++ T KY +  +  V +I  T+  L   F S  +  L  NLRYK  ++   F+F 
Sbjct: 57  LTKLDIEQTKKY-ALILAGVALIALTFGLLRGFFLSKGSTLLAKNLRYKLFSHVQEFSFK 115

Query: 288 VFHQFIT 268
            F +F T
Sbjct: 116 EFDKFST 122


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 600,598,169
Number of Sequences: 1657284
Number of extensions: 11855840
Number of successful extensions: 25504
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 24700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25500
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41902926763
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)