Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0327
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    27   2.1  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    27   2.7  
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    26   3.6  

>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -2

Query: 244 QGGWRHLRCRSLWARLTT*HEVGVSSSTHISN 149
           +G + +LRC+ L+++LTT HE  + +   I N
Sbjct: 595 RGKFINLRCKYLFSKLTTLHEKEIDTLLTIPN 626


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = -3

Query: 396 GTWQHLE-SIFFSIINIELRGNLRYKN--QTYFHCFTFNVFHQFITL 265
           GTWQH+E +I  SI + +L+  L +    +   + F    FH+F+ +
Sbjct: 371 GTWQHIEPNIIESIASYQLQHLLLFNEILKPDSNHFVLEKFHEFLKI 417


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 404 IITLQIWKEMYLNVIFRFNLCKFSINRFKCYW 499
           ++T+Q W  ++LN  F   +  FS N F   W
Sbjct: 326 LVTMQFWDGLWLNEGFATWMSWFSCNHFYPEW 357


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,634,603
Number of Sequences: 5004
Number of extensions: 56087
Number of successful extensions: 139
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)