Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0327
         (596 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0033 + 12530311-12531264                                         28   4.9  
11_06_0768 + 27129007-27129038,27129140-27129220,27129723-271300...    27   8.6  

>12_02_0033 + 12530311-12531264
          Length = 317

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 315 TYFHCFTFNVFHQFITL 265
           TYFH    NVFH+F +L
Sbjct: 301 TYFHLIPLNVFHKFFSL 317


>11_06_0768 + 27129007-27129038,27129140-27129220,27129723-27130089,
            27130165-27130255,27130515-27130595,27130764-27131830,
            27132060-27132071,27132465-27133209,27133210-27135244,
            27135712-27135787,27135925-27136029,27137080-27137166
          Length = 1592

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/86 (20%), Positives = 46/86 (53%), Gaps = 7/86 (8%)
 Frame = +1

Query: 190  KWLAEPIE-IYNVNDATHPET*VLSI*CNELMKNIECKTVKIRLVFISQISTKFD----- 351
            +W+ +P + +YN++++   ++  +   CNEL++N++  +         +   KF+     
Sbjct: 1111 EWMQDPYQGVYNMDNSRGFDSAFVDSSCNELIQNVDGDSEMDLYSEQFKEQVKFEDGHLL 1170

Query: 352  IYNTKKYRFQM-LPCSFDDHNVADME 426
            I+N +++ +Q+  P     H+ ++ME
Sbjct: 1171 IWNPREWEYQLPSPPPHGQHSGSEME 1196


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,391,569
Number of Sequences: 37544
Number of extensions: 296739
Number of successful extensions: 572
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)