Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0327
         (596 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36117| Best HMM Match : Rubredoxin (HMM E-Value=1.8)                30   1.2  
SB_39394| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_37084| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15)            27   8.7  

>SB_36117| Best HMM Match : Rubredoxin (HMM E-Value=1.8)
          Length = 996

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 93  FFFPRCVDDLTAPSVKWLLEPIDIY 19
           F  P   DDL+A SVKW + P D+Y
Sbjct: 193 FIQPVNADDLSASSVKWRVVPSDLY 217


>SB_39394| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -3

Query: 453 LKITFKYISFHICNVMIIKGTWQHLESIFFSIINIELR 340
           +++  KY SF  C+VM ++    H + +F  + ++ LR
Sbjct: 50  IRVYLKYFSFGECHVMFVESNVSHDDVVFVDMDDVMLR 87


>SB_37084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1361

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -3

Query: 84  PRCVDDLTAPSVKWLLEPIDIY 19
           P   DDL+A SVKW + P D+Y
Sbjct: 291 PVNADDLSASSVKWRVVPSDLY 312


>SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15)
          Length = 1774

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +1

Query: 313  RLVFISQISTKFDIYNTKKYRFQMLPCS 396
            ++  +S +   FD+Y+TK    ++ PCS
Sbjct: 1297 KITCLSDVLKSFDVYSTKTEEIRLHPCS 1324


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,537,961
Number of Sequences: 59808
Number of extensions: 381718
Number of successful extensions: 685
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)