Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0327
         (596 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical ...    28   4.4  
AF014939-2|ABA00177.1|  537|Caenorhabditis elegans Hypothetical ...    28   4.4  
AF014939-1|AAB63926.1|  578|Caenorhabditis elegans Hypothetical ...    28   4.4  
AF067607-7|AAF98613.1|  433|Caenorhabditis elegans Serpentine re...    28   5.8  
AC006776-6|AAF60624.1|  356|Caenorhabditis elegans Serpentine re...    27   7.7  

>AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical
           protein Y32B12B.4 protein.
          Length = 1528

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +1

Query: 139 DFFYCLYGWMNSRQPRVKWLAEPIEIYNVNDA 234
           +F Y +Y ++   + RVK L++P+ I N  +A
Sbjct: 440 NFVYHMYQFVKRNERRVKILSDPVSIQNARNA 471


>AF014939-2|ABA00177.1|  537|Caenorhabditis elegans Hypothetical
           protein ZC132.3b protein.
          Length = 537

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 320 TKRIFTVLHSMFFINSLHYILKTHVSGWVAS 228
           TKRIFTV+H +  +N L +       GW+ +
Sbjct: 78  TKRIFTVVHGITLVNGLSHFFNV---GWLVT 105


>AF014939-1|AAB63926.1|  578|Caenorhabditis elegans Hypothetical
           protein ZC132.3a protein.
          Length = 578

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 320 TKRIFTVLHSMFFINSLHYILKTHVSGWVAS 228
           TKRIFTV+H +  +N L +       GW+ +
Sbjct: 78  TKRIFTVVHGITLVNGLSHFFNV---GWLVT 105


>AF067607-7|AAF98613.1|  433|Caenorhabditis elegans Serpentine
           receptor, class t protein59 protein.
          Length = 433

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +2

Query: 407 ITLQIWKEMYLNVIFRFNLCKFSINRFKCYWGSVQLCCH*TNS 535
           IT Q    + L VIF+  L K S  +   Y G +  CC   NS
Sbjct: 183 ITFQTMYLLCLYVIFQSELVKSSCYKIMLYLGLMDTCCLIVNS 225


>AC006776-6|AAF60624.1|  356|Caenorhabditis elegans Serpentine
           receptor, class w protein99 protein.
          Length = 356

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +2

Query: 29  MGSSSHLTLGAVRSSTHLGKKKLSIKLFHVLQCVKSLISFI 151
           + S  ++ L ++   +   K K+  KLF V+QCV + +S +
Sbjct: 119 LASVRYVILKSLTDRSKFAKPKVGWKLFIVVQCVSATLSLV 159


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,234,725
Number of Sequences: 27780
Number of extensions: 303330
Number of successful extensions: 693
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)