Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0326
         (630 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    26   0.30 
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    23   1.6  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           22   3.7  

>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 25.8 bits (54), Expect = 0.30
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 487 LGIPQLKGVREYTNVDSPS*VDNVYQSLPTA 579
           LG  +L+GVR    +D+PS   N +Q  P A
Sbjct: 290 LGYAKLRGVRIIIEIDAPSHAGNGWQWGPDA 320


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +2

Query: 476 PYIAWGYPNLKVSVSIQTWI 535
           P+  W Y  L V+  +Q W+
Sbjct: 234 PHDQWAYEKLNVNDGLQLWV 253


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 350 PWYQPSFTEVRKVLQLFRLRQINNG 424
           P  QP+    R   +  R++Q+NNG
Sbjct: 80  PQQQPASVARRNARERNRVKQVNNG 104


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,348
Number of Sequences: 336
Number of extensions: 3031
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16188355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)