Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0326
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|...    77   3e-15
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy...    73   3e-14
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom...    63   4e-11
SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        29   0.42 
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    28   0.97 
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    27   1.7  
SPBC21C3.04c |||mitochondrial ribosomal protein subunit L34|Schi...    25   6.8  

>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 76.6 bits (180), Expect = 3e-15
 Identities = 50/126 (39%), Positives = 73/126 (57%), Gaps = 4/126 (3%)
 Frame = +3

Query: 258 ERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCLDCAK*T---MVC 428
           ER++I LAR+AR  GNY+VP E KL FV+RIRGIN + PK+ K    L   +      V 
Sbjct: 66  EREQIELARKARAEGNYFVPHEPKLIFVVRIRGINNIPPKARKIMQLLRLLQINNGIFVK 125

Query: 429 LYV*IRLL*ICYVSPSLTL-LGDTPT*RCP*VYKRGFAKLSGQRIPITSNSIVERGSINT 605
               I+ + +  V P +T  + +  T R   +YKRGF K++ QRIP++ N+I+E      
Sbjct: 126 FNKAIKEM-LQVVEPYVTYGIPNHKTVR-ELIYKRGFGKVNKQRIPLSDNAIIEAALGKY 183

Query: 606 TFICVE 623
           + + VE
Sbjct: 184 SILSVE 189



 Score = 61.7 bits (143), Expect = 8e-11
 Identities = 25/45 (55%), Positives = 34/45 (75%)
 Frame = +2

Query: 374 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLK 508
           + RK++QL RL QINNG+FV+ NKA   ML++ EPY+ +G PN K
Sbjct: 105 KARKIMQLLRLLQINNGIFVKFNKAIKEMLQVVEPYVTYGIPNHK 149



 Score = 31.9 bits (69), Expect = 0.079
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +1

Query: 109 PESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYR 252
           PES+LK            +    +++S+  KK+  I KRAE Y  EYR
Sbjct: 16  PESLLKKTKAQKQSREQIVAAAAEKKSARQKKRELIAKRAEAYEAEYR 63


>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 72.9 bits (171), Expect = 3e-14
 Identities = 47/125 (37%), Positives = 69/125 (55%), Gaps = 3/125 (2%)
 Frame = +3

Query: 258 ERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCLDCAK*T--MVCL 431
           ER++I L R+AR  GNYYVP E KL FVIRIRGIN + PK+ K    L   +    +   
Sbjct: 67  EREQIELGRKARAEGNYYVPDETKLVFVIRIRGINNIPPKARKIMQLLRLIQINNGVFVK 126

Query: 432 YV*IRLL*ICYVSPSLTL-LGDTPT*RCP*VYKRGFAKLSGQRIPITSNSIVERGSINTT 608
           +       +  V P +T  + +  T R   +YKRGF K++ QRI ++ N+I+E      +
Sbjct: 127 FNKATKEMLQVVEPYVTYGIPNLKTVR-ELLYKRGFGKVNKQRIALSDNAIIEAALGKYS 185

Query: 609 FICVE 623
            + +E
Sbjct: 186 ILSIE 190



 Score = 66.9 bits (156), Expect = 2e-12
 Identities = 28/45 (62%), Positives = 36/45 (80%)
 Frame = +2

Query: 374 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLK 508
           + RK++QL RL QINNGVFV+ NKAT  ML++ EPY+ +G PNLK
Sbjct: 106 KARKIMQLLRLIQINNGVFVKFNKATKEMLQVVEPYVTYGIPNLK 150



 Score = 31.9 bits (69), Expect = 0.079
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = +1

Query: 88  SKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYR 252
           SK+    PES+LK            +    +++++  KK+  I KRAE Y  EYR
Sbjct: 10  SKEQIFAPESLLKKKKTQEQSREQRVAAAAEKKAAQQKKRELIAKRAESYDAEYR 64


>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 62.9 bits (146), Expect = 4e-11
 Identities = 43/129 (33%), Positives = 65/129 (50%), Gaps = 6/129 (4%)
 Frame = +3

Query: 255 KERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCLDCAK*TMVCLY 434
           +ER+ IRL R A+N+G+ +VP E KL FVIRI G+  + PK  K    L  ++       
Sbjct: 64  RERERIRLNRSAKNKGDIFVPDETKLLFVIRIAGVKNMPPKIRKVLRLLRLSRINNAVFV 123

Query: 435 ----V*IRLL*IC--YVSPSLTLLGDTPT*RCP*VYKRGFAKLSGQRIPITSNSIVERGS 596
                  ++L I   YV   +  L          +YKRGF K++GQRI ++ N+++E   
Sbjct: 124 RNNKAVAQMLRIVEPYVMYGIPNLHSVR----ELIYKRGFGKINGQRIALSDNALIEEAL 179

Query: 597 INTTFICVE 623
                I +E
Sbjct: 180 GKYDVISIE 188



 Score = 62.9 bits (146), Expect = 4e-11
 Identities = 28/44 (63%), Positives = 34/44 (77%)
 Frame = +2

Query: 374 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNL 505
           ++RKVL+L RL +INN VFVR NKA   MLRI EPY+ +G PNL
Sbjct: 104 KIRKVLRLLRLSRINNAVFVRNNKAVAQMLRIVEPYVMYGIPNL 147



 Score = 31.5 bits (68), Expect = 0.10
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +1

Query: 109 PESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIR 258
           PE +LK            ++  + ++ +  K ++E FKRAE ++  YR R
Sbjct: 15  PEVLLKKRKVNERTRKERVEQAIAKKEAQKKNRKETFKRAETFINNYRQR 64


>SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 29.5 bits (63), Expect = 0.42
 Identities = 20/85 (23%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
 Frame = +2

Query: 350 PWYQPSFTEVRKVLQLFR--LRQINNGVFVRL--NKATVNMLRIAEPYIAWGYPNLKVSV 517
           P+Y+ S+++   VLQ+++  +R ++  +F++   N    +   I     + G+P+  V +
Sbjct: 37  PYYKNSYSDFISVLQMYKVHIRMVSIYIFLKALSNIFLASSCEITVRLSSGGHPSPPVHI 96

Query: 518 SIQTWIRQAEWTTYTNHFQQHC*KR 592
            +   I+  + +    H Q HC KR
Sbjct: 97  YMSALIKVCKKS--KPHLQTHCIKR 119


>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
           catalytic subunit|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1018

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
 Frame = +2

Query: 461 LRIAEPYIAWGYPNLKVSVSIQ--TWIRQAEWTTYTNHFQQHC 583
           L  AEP+++      K+   +Q  TW RQ  WT Y       C
Sbjct: 117 LEFAEPHLSKAIKFSKIDTPVQPKTWKRQPGWTKYAKDGSISC 159


>SPAC13G6.06c |||glycine cleavage complex subunit
           P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +2

Query: 428 FVRLNKATVNMLRIAEPYIAWGYPNLKVSVSIQ-TWIRQAEWTTYTNHFQ 574
           F  L     N  ++ + +I  GY N+K+  +IQ   +   EW T    +Q
Sbjct: 114 FTTLANNVANQNKLIKSFIGMGYYNVKLPAAIQRNVLENPEWYTQYTPYQ 163


>SPBC21C3.04c |||mitochondrial ribosomal protein subunit
           L34|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 108

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 533 IRQAEWTTYTNHFQQHC*KRLHKH 604
           ++Q  W TY N +Q    KR  KH
Sbjct: 57  MQQVRWKTYGNEYQPSNRKRKRKH 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,460,443
Number of Sequences: 5004
Number of extensions: 50669
Number of successful extensions: 121
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)