Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0326
(630 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814... 75 5e-14
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351... 75 5e-14
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 48 5e-06
10_06_0101 + 10736987-10737100,10737263-10737301,10737397-107374... 31 1.00
03_02_0651 + 10183050-10184167,10184350-10184974,10185023-101852... 27 9.3
>08_01_0835 +
8147177-8147359,8147871-8147968,8148045-8148102,
8148192-8148271,8148770-8148872,8148966-8149181
Length = 245
Score = 74.9 bits (176), Expect = 5e-14
Identities = 32/45 (71%), Positives = 40/45 (88%)
Frame = +2
Query: 374 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLK 508
+ RK+LQL RLRQI NGVF+++NKAT+NMLR EPY+A+GYPNLK
Sbjct: 101 KTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYPNLK 145
Score = 70.1 bits (164), Expect = 1e-12
Identities = 48/132 (36%), Positives = 73/132 (55%), Gaps = 9/132 (6%)
Frame = +3
Query: 255 KERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCLDCAK-*TMVCL 431
+E++ ++L R+AR +G +YV EAKL FV+RIRGIN + PK+ K L + V L
Sbjct: 61 QEKELVQLKREARMKGGFYVSPEAKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFL 120
Query: 432 YV---*IRLL-----*ICYVSPSLTLLGDTPT*RCP*VYKRGFAKLSGQRIPITSNSIVE 587
V I +L + Y P+L + + +YKRG+ KL+ QRIP+ +N ++E
Sbjct: 121 KVNKATINMLRRVEPYVAYGYPNLKSVREL-------IYKRGYGKLNKQRIPLQNNKVIE 173
Query: 588 RGSINTTFICVE 623
G IC+E
Sbjct: 174 EGLGKHDIICIE 185
Score = 36.3 bits (80), Expect = 0.020
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +1
Query: 94 KLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEY 249
K VPESVLK + L + A++ ++ IF RA+QY +EY
Sbjct: 7 KAAVVPESVLKKRKREEQWAADRKEKALAEKKKAVESRKLIFARAKQYAQEY 58
>04_04_1075 +
30634141-30634320,30634917-30635014,30635113-30635170,
30635259-30635338,30635686-30635788,30635847-30636080
Length = 250
Score = 74.9 bits (176), Expect = 5e-14
Identities = 32/45 (71%), Positives = 40/45 (88%)
Frame = +2
Query: 374 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLK 508
+ RK+LQL RLRQI NGVF+++NKAT+NMLR EPY+A+GYPNLK
Sbjct: 100 KTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYPNLK 144
Score = 63.3 bits (147), Expect = 2e-10
Identities = 44/120 (36%), Positives = 68/120 (56%), Gaps = 9/120 (7%)
Frame = +3
Query: 255 KERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCLDCAK-*TMVCL 431
+E++ ++L R+AR +G +YV E KL FV+RIRGIN + PK+ K L + V L
Sbjct: 60 QEKELVQLKREARMKGGFYVSPEEKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFL 119
Query: 432 YV---*IRLL-----*ICYVSPSLTLLGDTPT*RCP*VYKRGFAKLSGQRIPITSNSIVE 587
V I +L + Y P+L + + +YKRG+ KL+ QRIP+T+N ++E
Sbjct: 120 KVNKATINMLRRVEPYVAYGYPNLKSVREL-------IYKRGYGKLNKQRIPLTNNKVIE 172
Score = 32.3 bits (70), Expect = 0.33
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +1
Query: 106 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEY 249
VPESVL+ + + + +I+ ++ IF RA+QY +EY
Sbjct: 10 VPESVLRKRKREEVWAAASKEKAVAEKKKSIESRKLIFSRAKQYAEEY 57
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 48.4 bits (110), Expect = 5e-06
Identities = 19/44 (43%), Positives = 31/44 (70%)
Frame = +2
Query: 377 VRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLK 508
+R++L+ RL Q+ GVF++ AT+ L + EP+I +G+PNLK
Sbjct: 104 MRRILRKLRLTQVLTGVFLKATDATMKRLLVVEPFITYGFPNLK 147
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 519 VYKRGFAKLSGQRIPITSNSIVERGSINTTFICVE 623
+YK+G L + P+TSN ++E+ IC+E
Sbjct: 153 IYKKGRGFLDKEPFPLTSNDLIEKALGEYGIICLE 187
>10_06_0101 +
10736987-10737100,10737263-10737301,10737397-10737474,
10737539-10737685,10737781-10737888,10738115-10738449,
10738572-10739544,10739702-10739980
Length = 690
Score = 30.7 bits (66), Expect = 1.00
Identities = 15/35 (42%), Positives = 24/35 (68%)
Frame = +1
Query: 172 TLKRRSSAIKKKREIFKRAEQYVKEYRIRNVMKSD 276
TL+ R+ IK KRE+F+R KE+RI+ +++ D
Sbjct: 149 TLETRTDPIKLKREVFRRKR---KEHRIQELLQVD 180
>03_02_0651 +
10183050-10184167,10184350-10184974,10185023-10185208,
10185325-10185660
Length = 754
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 295 IVATTTFPGKPNWHLSSESVVSTKFH 372
+V +P NWHLSS S + K H
Sbjct: 573 VVLNDLYPKCSNWHLSSTSYLQAKRH 598
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,698,568
Number of Sequences: 37544
Number of extensions: 316971
Number of successful extensions: 702
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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