Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0326
(630 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32) 84 8e-17
SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_39528| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_25312| Best HMM Match : Vicilin_N (HMM E-Value=0.61) 28 7.2
SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37) 28 7.2
SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_51562| Best HMM Match : HARP (HMM E-Value=0.00049) 28 7.2
SB_2192| Best HMM Match : rve (HMM E-Value=4e-23) 28 7.2
SB_25984| Best HMM Match : ubiquitin (HMM E-Value=0) 27 9.5
>SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)
Length = 245
Score = 84.2 bits (199), Expect = 8e-17
Identities = 38/45 (84%), Positives = 42/45 (93%)
Frame = +2
Query: 374 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLK 508
+VRK+LQL RLRQINNGVFVRLNKAT NMLRI +PYIA+GYPNLK
Sbjct: 101 KVRKILQLLRLRQINNGVFVRLNKATANMLRIVQPYIAFGYPNLK 145
Score = 75.8 bits (178), Expect = 3e-14
Identities = 52/128 (40%), Positives = 69/128 (53%), Gaps = 5/128 (3%)
Frame = +3
Query: 255 KERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCLDCAK*TMVCLY 434
KE DE+R+ + A+ GN+YVP EA+LAFVIRIRGIN VSPK K L + +
Sbjct: 61 KEVDELRMKKMAKKHGNFYVPPEARLAFVIRIRGINGVSPKVRKI---LQLLRLRQINNG 117
Query: 435 V*IRL-----L*ICYVSPSLTLLGDTPT*RCP*VYKRGFAKLSGQRIPITSNSIVERGSI 599
V +RL + V P + +YKRG+ K+ QR+ +T NSIVE+
Sbjct: 118 VFVRLNKATANMLRIVQPYIAFGYPNLKSVRELIYKRGYGKVDKQRVALTDNSIVEKVLG 177
Query: 600 NTTFICVE 623
ICVE
Sbjct: 178 KHGIICVE 185
Score = 48.0 bits (109), Expect = 6e-06
Identities = 24/61 (39%), Positives = 35/61 (57%)
Frame = +1
Query: 82 EDSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIRN 261
+D K+P VPE++LK + L ++ K++EIFKRAE+YVKEYR +
Sbjct: 3 QDRVKVPRVPETLLKKRKSLEQIKAARAKAQLAQKKLQHGKRKEIFKRAEKYVKEYRQKE 62
Query: 262 V 264
V
Sbjct: 63 V 63
>SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1211
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +1
Query: 280 PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRSP*SSATV*TAPNK 417
PDK A+ TTT P + ++ T + R P S T+ T P K
Sbjct: 363 PDKTAVPKTTTAPETTDASKTTVETQQTTYSRDPEISVTISTQPKK 408
>SB_39528| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1029
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +1
Query: 418 QWCVCTSE*GYCEYATYRRALHCLGIPQLKGVREYTNV 531
+WC T E Y TY RA+ C + G + + V
Sbjct: 841 EWCKATMEASYTMNITYHRAIKCSPYEAVFGFKAHREV 878
>SB_25312| Best HMM Match : Vicilin_N (HMM E-Value=0.61)
Length = 219
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +1
Query: 418 QWCVCTSE*GYCEYATYRRALHCLGIPQLKGVREYTNV 531
+WC T E Y TY RA+ C + G + + V
Sbjct: 64 EWCKATMEASYTMNITYHRAIKCSPYEAVFGFKAHREV 101
>SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)
Length = 712
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 255 KERDEIRLARQARNRGNYYVP 317
K RD +AR+ R+RG YY+P
Sbjct: 483 KIRDTSSIARETRSRGPYYLP 503
>SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3297
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +1
Query: 418 QWCVCTSE*GYCEYATYRRALHCLGIPQLKGVREYTNV 531
+WC T E Y TY RA+ C + G + + V
Sbjct: 1011 EWCKATMEASYTMNITYHRAIKCSPYQAVFGFKAHREV 1048
>SB_51562| Best HMM Match : HARP (HMM E-Value=0.00049)
Length = 508
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 482 IAWGYPNLKVSVSIQTWIRQAEWTTYTNHFQQH 580
I+ +P+ K + QTW RQA TT +N Q++
Sbjct: 199 ISRSFPSSKPINTAQTWSRQAHQTTNSNTSQEN 231
>SB_2192| Best HMM Match : rve (HMM E-Value=4e-23)
Length = 491
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +1
Query: 418 QWCVCTSE*GYCEYATYRRALHCLGIPQLKGVREYTNV 531
+WC T E Y TY RA+ C + G + + V
Sbjct: 281 EWCKATMEASYTMNITYHRAIKCSPYQAVFGFKAHREV 318
>SB_25984| Best HMM Match : ubiquitin (HMM E-Value=0)
Length = 147
Score = 27.5 bits (58), Expect = 9.5
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Frame = +3
Query: 237 RQGIPHKERDEIRLARQ---ARNRGNYYVPGEAKLAFVIRIRGINQVSPKS 380
++GIP ++ I +Q R +Y + E+ L V+R+RG Q+S K+
Sbjct: 33 KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQISVKA 83
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,503,318
Number of Sequences: 59808
Number of extensions: 375492
Number of successful extensions: 865
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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