Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0325
         (757 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    26   5.0  
SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        26   5.0  
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|...    25   8.8  

>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 616 VSETIFSNIKKLTTYAEKYSQKTLFLIPKYNMLYTK 509
           +S+ I    K L  ++EK+  K L  IP+    Y K
Sbjct: 730 MSDVIIKTSKHLEEFSEKFIPKKLVKIPRLQKSYAK 765


>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
 Frame = +2

Query: 317 IHFSFQGTCYIIFYISLDENLSFFNYYYY---CVFNHFF 424
           I F +   CY    I L   L    YYYY   C+  HFF
Sbjct: 44  IPFFYDRICYDYKNILLKYELFIIYYYYYLLICLSPHFF 82


>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 456

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 371 ENLSFFNYYYYCVFNHFFYLNSNNI 445
           + L+F  +++  V+ HF Y+NS  I
Sbjct: 172 QTLNFKLWFFNEVYRHFLYINSTRI 196


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,772,071
Number of Sequences: 5004
Number of extensions: 54740
Number of successful extensions: 137
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)