Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0325
         (757 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12339| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_35558| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_3393| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=0.012)           28   9.4  
SB_31284| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  
SB_15097| Best HMM Match : p450 (HMM E-Value=0)                        28   9.4  

>SB_12339| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 116

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = -2

Query: 285 FLDYFHGSFY*IQYRHIKALVYP*LKKSDVYIGITHTKYHNVISIFLKRKAFYY 124
           +++Y H  +  I+YRHI+            YI   H +YH++   +++ + F Y
Sbjct: 44  YIEYRHIEYRHIEYRHIEYRHIEYRHIEYRYIKYRHIEYHHIEYRYIEYRRFEY 97


>SB_35558| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 228

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = -2

Query: 285 FLDYFHGSFY*IQYRHIKALVYP*LKKSDVYIGITHTKYHNVISIFLKRKAFYY 124
           +++Y H  +  I+YRHI+            YI   H +YH++   +++ + F Y
Sbjct: 157 YIEYRHIEYRHIEYRHIEYRHIEYRHIEYRYIKYRHIEYHHIEYRYIEYRRFEY 210


>SB_3393| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=0.012)
          Length = 626

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +2

Query: 569 RISSQFFNVAKYSFRNSTDNYKIENHLYKMTR*TSKL 679
           R+S+  F V+  ++R S   Y+I N  Y+++  T ++
Sbjct: 440 RVSNPIFRVSNPTYRVSNPTYRISNSTYRVSNPTYRV 476


>SB_31284| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 77

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = -1

Query: 616 VSETIFSNIKKLTTYAEKYSQ--KTLFLIPKYNMLYTKTIY 500
           V  T F N KKLT Y+EK+S      +   K+++++ + +Y
Sbjct: 30  VLRTDFQNTKKLTKYSEKFSALFDVKWAYLKHHVMFFRHVY 70


>SB_15097| Best HMM Match : p450 (HMM E-Value=0)
          Length = 1310

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 506  NILLKHRLINVSTFLFIILVLYCSSL 429
            N+L  H++I  + F + +LVL C S+
Sbjct: 1162 NLLTVHKMIPFNAFFYTLLVLLCGSI 1187


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,737,943
Number of Sequences: 59808
Number of extensions: 341080
Number of successful extensions: 983
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)