Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0325
         (757 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110487-7|CAB54431.1|  581|Caenorhabditis elegans Hypothetical ...    33   0.29 
U53149-5|AAA96121.2|  427|Caenorhabditis elegans Hypothetical pr...    29   3.6  
AL031632-5|CAE11314.1|  324|Caenorhabditis elegans Hypothetical ...    29   3.6  

>AL110487-7|CAB54431.1|  581|Caenorhabditis elegans Hypothetical
           protein Y39E4B.10 protein.
          Length = 581

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 19/55 (34%), Positives = 31/55 (56%)
 Frame = -1

Query: 667 SSRHFIKMIFNFIIVGTVSETIFSNIKKLTTYAEKYSQKTLFLIPKYNMLYTKTI 503
           + + F K +F F+I   + ++IFSN KK  T+ + +S+  +F     N LYT  I
Sbjct: 335 TKKFFKKNLFFFLIFNNLEKSIFSNFKKSNTFFQ-FSKNKIFNFLIKN-LYTNAI 387


>U53149-5|AAA96121.2|  427|Caenorhabditis elegans Hypothetical
           protein C24B5.1 protein.
          Length = 427

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 311 TLIHFSFQGTCYIIFYISLDENLSFFNYYYYCVFNHF 421
           +L+ F  +   YI FY    ++L   N YY C+FN F
Sbjct: 128 SLLVFWIEEVAYIYFYDIFQDSL-LRNSYYSCIFNTF 163


>AL031632-5|CAE11314.1|  324|Caenorhabditis elegans Hypothetical
           protein Y32B12B.7 protein.
          Length = 324

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 344 YIIFYISLDENLSFFNYYYYC 406
           YI+ YISLD       +Y+YC
Sbjct: 282 YIVHYISLDAQAHVITWYFYC 302


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,956,219
Number of Sequences: 27780
Number of extensions: 294491
Number of successful extensions: 818
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)