Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0325
         (757 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    25   0.77 
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    25   0.77 
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    25   0.77 
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    25   0.77 
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   4.1  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   4.1  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   5.4  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +2

Query: 608 FRNSTDNYKIENHLYKMTR*TSKLFYFSE*FCSHQHQTV 724
           +RN T NY +  HL    +    +F F +  CS   +++
Sbjct: 169 YRNGTVNYLMRRHLILSCQGRLNIFPFDDPLCSFAIESI 207


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +2

Query: 608 FRNSTDNYKIENHLYKMTR*TSKLFYFSE*FCSHQHQTV 724
           +RN T NY +  HL    +    +F F +  CS   +++
Sbjct: 169 YRNGTVNYLMRRHLILSCQGRLNIFPFDDPLCSFAIESI 207


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +2

Query: 608 FRNSTDNYKIENHLYKMTR*TSKLFYFSE*FCSHQHQTV 724
           +RN T NY +  HL    +    +F F +  CS   +++
Sbjct: 220 YRNGTVNYLMRRHLILSCQGRLNIFPFDDPLCSFAIESI 258


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +2

Query: 608 FRNSTDNYKIENHLYKMTR*TSKLFYFSE*FCSHQHQTV 724
           +RN T NY +  HL    +    +F F +  CS   +++
Sbjct: 169 YRNGTVNYLMRRHLILSCQGRLNIFPFDDPLCSFAIESI 207


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
 Frame = -3

Query: 587 KTDYLCGEIFTKNSFFN-----PKIQHAVYKDNILLKHRLINVSTFLF 459
           KT  L  E   KNSFFN       ++ + Y     L  R++N + F F
Sbjct: 445 KTVNLAAEKKDKNSFFNMFKKFASLKKSPYFKEANLNTRMLNDNVFAF 492


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
 Frame = -3

Query: 587 KTDYLCGEIFTKNSFFN-----PKIQHAVYKDNILLKHRLINVSTFLF 459
           KT  L  E   KNSFFN       ++ + Y     L  R++N + F F
Sbjct: 445 KTVNLAAEKKDKNSFFNMFKKFASLKKSPYFKEANLNTRMLNDNVFAF 492


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 392 YYYYCVFNHFFYLNSNNI 445
           +Y  CV   F YL+S NI
Sbjct: 470 FYTACVVEAFDYLHSRNI 487


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,410
Number of Sequences: 438
Number of extensions: 3755
Number of successful extensions: 24
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)