Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0324
         (662 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   3.0  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    21   6.8  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    21   9.0  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    21   9.0  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
 Frame = +2

Query: 551 HH--EVRRRHP*DLYANTVMSGGTH 619
           HH   V  RHP + +    MSG TH
Sbjct: 151 HHLGSVYSRHPYESWPFNTMSGATH 175


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 391 ATAAASTSLEKSYELP 438
           A AAAS S++ SY++P
Sbjct: 178 AVAAASGSVDISYDVP 193


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 183 VSPTPYPSTKVTLCPTPSSVWT 248
           +SP  +P+T   +   P+SV T
Sbjct: 450 ISPEVFPNTNNAIMTPPASVQT 471


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 183 VSPTPYPSTKVTLCPTPSSVWT 248
           +SP  +P+T   +   P+SV T
Sbjct: 398 ISPEVFPNTNNAIMTPPASVQT 419


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,271
Number of Sequences: 336
Number of extensions: 2738
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17177325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)