Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0324
(662 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 172 2e-43
SB_56| Best HMM Match : Actin (HMM E-Value=0) 172 2e-43
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 172 2e-43
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 171 4e-43
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 166 2e-41
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 145 3e-35
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 137 9e-33
SB_54| Best HMM Match : Actin (HMM E-Value=0) 137 9e-33
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 115 3e-26
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 113 1e-25
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 83 3e-16
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 70 1e-12
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) 67 1e-11
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 42 3e-04
SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24) 35 0.068
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 32 0.36
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 32 0.36
SB_13911| Best HMM Match : PAN (HMM E-Value=0.033) 31 0.84
SB_28336| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_55729| Best HMM Match : YajC (HMM E-Value=0.56) 29 4.5
SB_3355| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 172 bits (418), Expect = 2e-43
Identities = 81/84 (96%), Positives = 83/84 (98%)
Frame = +2
Query: 2 PEEHPVLLTEAPLNPKANREKMTQIMFXTFNSPAMYVAIQAVLSLYASGRTTGIVLDSGD 181
PEEHPVLLTEAPLNPKANREKMTQIMF TFNSPAMYVAIQAVLSLYASGRTTGIV+DSGD
Sbjct: 98 PEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGD 157
Query: 182 GVSHTVPIYEGYALPHAILRLDLA 253
GV+HTVPIYEGYALPHAILRLDLA
Sbjct: 158 GVTHTVPIYEGYALPHAILRLDLA 181
Score = 165 bits (402), Expect = 2e-41
Identities = 80/87 (91%), Positives = 82/87 (94%)
Frame = +1
Query: 247 LGCRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDLXQEMATAAASTSLEKS 426
L RDLTDYLMKILTERGYSFTTTAEREIVRDIKEKL YVALD QEMATAAAS+SLEKS
Sbjct: 180 LAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEQEMATAAASSSLEKS 239
Query: 427 YELPDGQVITIGNERFRCPEALFQPSF 507
YELPDGQVITIGNERFRCPEA+FQPSF
Sbjct: 240 YELPDGQVITIGNERFRCPEAMFQPSF 266
Score = 61.7 bits (143), Expect = 5e-10
Identities = 33/53 (62%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
Frame = +3
Query: 495 PAFLPGMESCGIHETVYNSIMKCDVDIRKTC-TPTPSCPVVHMYPGIADRCRR 650
P+FL GMES GIHET YNSIMKCDVDIRK T M+PGIADR ++
Sbjct: 264 PSFL-GMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQK 315
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 172 bits (418), Expect = 2e-43
Identities = 81/84 (96%), Positives = 83/84 (98%)
Frame = +2
Query: 2 PEEHPVLLTEAPLNPKANREKMTQIMFXTFNSPAMYVAIQAVLSLYASGRTTGIVLDSGD 181
PEEHPVLLTEAPLNPKANREKMTQIMF TFNSPAMYVAIQAVLSLYASGRTTGIV+DSGD
Sbjct: 98 PEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGD 157
Query: 182 GVSHTVPIYEGYALPHAILRLDLA 253
GV+HTVPIYEGYALPHAILRLDLA
Sbjct: 158 GVTHTVPIYEGYALPHAILRLDLA 181
Score = 166 bits (403), Expect = 2e-41
Identities = 79/87 (90%), Positives = 82/87 (94%)
Frame = +1
Query: 247 LGCRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDLXQEMATAAASTSLEKS 426
L RDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALD QEM TAA+S+SLEKS
Sbjct: 180 LAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTAASSSSLEKS 239
Query: 427 YELPDGQVITIGNERFRCPEALFQPSF 507
YELPDGQVITIGNERFRCPEA+FQPSF
Sbjct: 240 YELPDGQVITIGNERFRCPEAMFQPSF 266
Score = 63.3 bits (147), Expect = 2e-10
Identities = 34/53 (64%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
Frame = +3
Query: 495 PAFLPGMESCGIHETVYNSIMKCDVDIRKTC-TPTPSCPVVHMYPGIADRCRR 650
P+FL GMES GIHET YNSIMKCDVDIRK T MYPGIADR ++
Sbjct: 264 PSFL-GMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMYPGIADRMQK 315
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 172 bits (418), Expect = 2e-43
Identities = 81/84 (96%), Positives = 83/84 (98%)
Frame = +2
Query: 2 PEEHPVLLTEAPLNPKANREKMTQIMFXTFNSPAMYVAIQAVLSLYASGRTTGIVLDSGD 181
PEEHPVLLTEAPLNPKANREKMTQIMF TFNSPAMYVAIQAVLSLYASGRTTGIV+DSGD
Sbjct: 99 PEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGD 158
Query: 182 GVSHTVPIYEGYALPHAILRLDLA 253
GV+HTVPIYEGYALPHAILRLDLA
Sbjct: 159 GVTHTVPIYEGYALPHAILRLDLA 182
Score = 166 bits (404), Expect = 1e-41
Identities = 79/87 (90%), Positives = 82/87 (94%)
Frame = +1
Query: 247 LGCRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDLXQEMATAAASTSLEKS 426
L RDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALD QEM TAA+S+SLEKS
Sbjct: 181 LAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMTTAASSSSLEKS 240
Query: 427 YELPDGQVITIGNERFRCPEALFQPSF 507
YELPDGQVITIGNERFRCPEA+FQPSF
Sbjct: 241 YELPDGQVITIGNERFRCPEAMFQPSF 267
Score = 63.3 bits (147), Expect = 2e-10
Identities = 34/53 (64%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
Frame = +3
Query: 495 PAFLPGMESCGIHETVYNSIMKCDVDIRKTC-TPTPSCPVVHMYPGIADRCRR 650
P+FL GMES GIHET YNSIMKCDVDIRK T MYPGIADR ++
Sbjct: 265 PSFL-GMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMYPGIADRMQK 316
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 171 bits (416), Expect = 4e-43
Identities = 80/84 (95%), Positives = 83/84 (98%)
Frame = +2
Query: 2 PEEHPVLLTEAPLNPKANREKMTQIMFXTFNSPAMYVAIQAVLSLYASGRTTGIVLDSGD 181
PEEHPVLLTEAPLNPKANREKMTQIMF TFNSPAMYVAIQAVLSLYASGRTTGIV+DSGD
Sbjct: 99 PEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGD 158
Query: 182 GVSHTVPIYEGYALPHAILRLDLA 253
GV+HTVPIYEGYALPHAI+RLDLA
Sbjct: 159 GVTHTVPIYEGYALPHAIIRLDLA 182
Score = 166 bits (403), Expect = 2e-41
Identities = 79/87 (90%), Positives = 82/87 (94%)
Frame = +1
Query: 247 LGCRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDLXQEMATAAASTSLEKS 426
L RDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALD QEM TAA+S+SLEKS
Sbjct: 181 LAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMETAASSSSLEKS 240
Query: 427 YELPDGQVITIGNERFRCPEALFQPSF 507
YELPDGQVITIGNERFRCPEA+FQPSF
Sbjct: 241 YELPDGQVITIGNERFRCPEAMFQPSF 267
Score = 63.3 bits (147), Expect = 2e-10
Identities = 34/53 (64%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
Frame = +3
Query: 495 PAFLPGMESCGIHETVYNSIMKCDVDIRKTC-TPTPSCPVVHMYPGIADRCRR 650
P+FL GMES GIHET YNSIMKCDVDIRK T MYPGIADR ++
Sbjct: 265 PSFL-GMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMYPGIADRMQK 316
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 166 bits (403), Expect = 2e-41
Identities = 79/87 (90%), Positives = 82/87 (94%)
Frame = +1
Query: 247 LGCRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDLXQEMATAAASTSLEKS 426
L RDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALD QEM TAA+S+SLEKS
Sbjct: 143 LAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTAASSSSLEKS 202
Query: 427 YELPDGQVITIGNERFRCPEALFQPSF 507
YELPDGQVITIGNERFRCPEA+FQPSF
Sbjct: 203 YELPDGQVITIGNERFRCPEAMFQPSF 229
Score = 124 bits (298), Expect = 9e-29
Identities = 58/67 (86%), Positives = 63/67 (94%)
Frame = +2
Query: 53 NREKMTQIMFXTFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHA 232
N + M +IMF TFNSPAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHA
Sbjct: 78 NWDDMEKIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHA 137
Query: 233 ILRLDLA 253
I+RLDLA
Sbjct: 138 IIRLDLA 144
Score = 64.1 bits (149), Expect = 1e-10
Identities = 34/53 (64%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
Frame = +3
Query: 495 PAFLPGMESCGIHETVYNSIMKCDVDIRKTC-TPTPSCPVVHMYPGIADRCRR 650
P+FL GMES GIHET YNSIMKCDVDIRK T MYPGIADR ++
Sbjct: 227 PSFL-GMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQK 278
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 145 bits (351), Expect = 3e-35
Identities = 70/75 (93%), Positives = 72/75 (96%), Gaps = 2/75 (2%)
Frame = +2
Query: 2 PEEHPVLLTEAPLNPKANREKMTQIMFXTFNSPAMYVAIQAVLSLYASGRTTGIVLDSGD 181
PEEHPVLLTEAPLNPKANREKMTQIMF TFNSPAMYVAIQAVLSLYASGRTTGIV+DSGD
Sbjct: 99 PEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGD 158
Query: 182 GVSHTVPIYE--GYA 220
GVSHTVPIYE GY+
Sbjct: 159 GVSHTVPIYEERGYS 173
Score = 141 bits (341), Expect = 5e-34
Identities = 67/83 (80%), Positives = 72/83 (86%)
Frame = +1
Query: 259 DLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDLXQEMATAAASTSLEKSYELP 438
D + + I ERGYSFTTTAEREIVRDIKEKLCYVALD QEM TAA+S+S+EKSYELP
Sbjct: 158 DGVSHTVPIYEERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTAASSSSIEKSYELP 217
Query: 439 DGQVITIGNERFRCPEALFQPSF 507
DGQVITIGNERFRCPEAL QPSF
Sbjct: 218 DGQVITIGNERFRCPEALLQPSF 240
Score = 63.3 bits (147), Expect = 2e-10
Identities = 33/53 (62%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
Frame = +3
Query: 495 PAFLPGMESCGIHETVYNSIMKCDVDIRKTC-TPTPSCPVVHMYPGIADRCRR 650
P+FL GMES GIHET YNSIMKCDVDIRK T MYPG+ADR ++
Sbjct: 238 PSFL-GMESSGIHETTYNSIMKCDVDIRKDLYANTVMSGGTTMYPGLADRMQK 289
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 137 bits (331), Expect = 9e-33
Identities = 57/82 (69%), Positives = 75/82 (91%)
Frame = +2
Query: 8 EHPVLLTEAPLNPKANREKMTQIMFXTFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGV 187
+HPVLLTEAPLNP+ NREK ++ F TFN PA+++++QAVLSLYA+GRTTG+VLD+GDGV
Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLDAGDGV 185
Query: 188 SHTVPIYEGYALPHAILRLDLA 253
SH+VPIYEG+A+PH+I+R D+A
Sbjct: 186 SHSVPIYEGFAMPHSIMRTDIA 207
Score = 33.9 bits (74), Expect = 0.12
Identities = 15/33 (45%), Positives = 24/33 (72%)
Frame = +1
Query: 256 RDLTDYLMKILTERGYSFTTTAEREIVRDIKEK 354
RD++ YL +L + G+ F +++E EIVR IKE+
Sbjct: 209 RDVSRYLRLLLRKEGHCFHSSSELEIVRTIKEE 241
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 137 bits (331), Expect = 9e-33
Identities = 61/83 (73%), Positives = 71/83 (85%)
Frame = +2
Query: 5 EEHPVLLTEAPLNPKANREKMTQIMFXTFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDG 184
E+ PVLLTEAPLNPK NRE+M Q+MF +FN P MYVA+QAV++LYASGRTTG V D GDG
Sbjct: 2144 EDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQAVMALYASGRTTGTVFDCGDG 2203
Query: 185 VSHTVPIYEGYALPHAILRLDLA 253
VSHTVP+Y+GY LPHA R+DLA
Sbjct: 2204 VSHTVPVYDGYWLPHATQRIDLA 2226
Score = 107 bits (258), Expect = 6e-24
Identities = 50/86 (58%), Positives = 62/86 (72%)
Frame = +1
Query: 247 LGCRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDLXQEMATAAASTSLEKS 426
L RDLT YL +++TERGYSF +TAE++I+RD+KE LCY A+D +E+ A S E
Sbjct: 2225 LAGRDLTHYLQRLVTERGYSFQSTAEQQIIRDLKETLCYCAMDYERELKEAETSDDCEAP 2284
Query: 427 YELPDGQVITIGNERFRCPEALFQPS 504
Y LPDGQ I IG+ERFR E LFQPS
Sbjct: 2285 YMLPDGQSIRIGSERFRAAEPLFQPS 2310
Score = 36.3 bits (80), Expect = 0.022
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
Frame = +3
Query: 483 RGSLPAFLP---GMESCGIHETVYNSIMKCDVDIR 578
R + P F P G + GIHE+++ SI KCD+D+R
Sbjct: 2301 RAAEPLFQPSLLGRDIDGIHESIFKSIKKCDIDLR 2335
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 115 bits (277), Expect = 3e-26
Identities = 54/60 (90%), Positives = 56/60 (93%)
Frame = +2
Query: 74 IMFXTFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLA 253
IMF FNSPA+YVAIQAVLSLYASGRTTG+V DSGDGVSH VPIYEGYALPHAILRLDLA
Sbjct: 1 IMFEAFNSPAVYVAIQAVLSLYASGRTTGVVFDSGDGVSHNVPIYEGYALPHAILRLDLA 60
Score = 88.6 bits (210), Expect = 4e-18
Identities = 41/48 (85%), Positives = 44/48 (91%)
Frame = +1
Query: 247 LGCRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDLXQEM 390
L RDLTDYLMK++TERGYSFTTTAEREIVRDIKEKLCYVALD QE+
Sbjct: 59 LAGRDLTDYLMKLMTERGYSFTTTAEREIVRDIKEKLCYVALDFYQEI 106
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 113 bits (272), Expect = 1e-25
Identities = 50/84 (59%), Positives = 62/84 (73%)
Frame = +2
Query: 2 PEEHPVLLTEAPLNPKANREKMTQIMFXTFNSPAMYVAIQAVLSLYASGRTTGIVLDSGD 181
P VLLTE PLNP NREKM ++MF + +Y+AIQAVL+LYA G TG+V+DSGD
Sbjct: 102 PRNTKVLLTEPPLNPMKNREKMIEVMFENYQFEGVYIAIQAVLTLYAQGLLTGVVIDSGD 161
Query: 182 GVSHTVPIYEGYALPHAILRLDLA 253
GV+H P+YEG+ALPH RLD+A
Sbjct: 162 GVTHICPVYEGFALPHLTRRLDIA 185
Score = 94.7 bits (225), Expect = 6e-20
Identities = 43/82 (52%), Positives = 57/82 (69%)
Frame = +1
Query: 256 RDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDLXQEMATAAASTSLEKSYEL 435
RD+T YL+K++ RGY+F TA+ E VR +KEKLCYV ++ QE A +T L + Y L
Sbjct: 187 RDITKYLIKLMLLRGYAFNHTADFETVRMMKEKLCYVGYNIEQEQKLALETTVLVEQYTL 246
Query: 436 PDGQVITIGNERFRCPEALFQP 501
PDG+V+ + ERF PEALFQP
Sbjct: 247 PDGRVVKLSGERFEAPEALFQP 268
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 82.6 bits (195), Expect = 3e-16
Identities = 35/81 (43%), Positives = 57/81 (70%)
Frame = +2
Query: 11 HPVLLTEAPLNPKANREKMTQIMFXTFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVS 190
HP+L++EA N + REK+T++MF +N PA ++ +VL+ +A+GR+ G+V+DSG +
Sbjct: 34 HPLLMSEAAWNTRIKREKLTELMFEKYNVPAFFLCKNSVLTAFANGRSNGLVIDSGATQT 93
Query: 191 HTVPIYEGYALPHAILRLDLA 253
VP+++GY L AI+R LA
Sbjct: 94 SAVPVHDGYVLQQAIVRSPLA 114
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 70.1 bits (164), Expect = 1e-12
Identities = 36/86 (41%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Frame = +1
Query: 247 LGCRDLTDYLMKILTE-RGYSFTTTAEREIVRDIKEKLCYVALDLXQEMATAAASTSLEK 423
+G LT+ L + L + RG++FT+++ +IV DIKEK+CY++ D +E+ + L K
Sbjct: 810 IGGHHLTENLKQYLRDQRGHNFTSSSGWQIVNDIKEKICYLSKDHLKEVHNYKTNEGLTK 869
Query: 424 SYELPDGQVITIGNERFRCPEALFQP 501
Y LPDGQ+I+IG E E LF+P
Sbjct: 870 FYTLPDGQMISIGYECISSMEPLFRP 895
Score = 42.7 bits (96), Expect = 3e-04
Identities = 20/44 (45%), Positives = 26/44 (59%)
Frame = +2
Query: 119 QAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 250
Q LSLYASG T G+ L SG + IYEG+ L H + L++
Sbjct: 767 QLSLSLYASGMTLGVCLSSGFSCTQAAVIYEGHTLNHTLQTLEI 810
>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
Length = 149
Score = 66.9 bits (156), Expect = 1e-11
Identities = 29/36 (80%), Positives = 33/36 (91%)
Frame = +1
Query: 400 AASTSLEKSYELPDGQVITIGNERFRCPEALFQPSF 507
A S LEK+YELPDGQVI+IGNERFRCPEA+FQP+F
Sbjct: 5 ANSPILEKTYELPDGQVISIGNERFRCPEAMFQPAF 40
Score = 56.0 bits (129), Expect = 3e-08
Identities = 31/55 (56%), Positives = 38/55 (69%), Gaps = 3/55 (5%)
Frame = +3
Query: 495 PAFLPGMESCGIHETVYNSIMKCDVDIRKTCTPTPSCPV---VHMYPGIADRCRR 650
PAFL GME+ GIHE +YN IMKCDVDIRK +C + M+PGIADR ++
Sbjct: 38 PAFL-GMEAPGIHEAIYNCIMKCDVDIRKDL--YSNCVLSGGSTMFPGIADRMQK 89
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 42.3 bits (95), Expect = 3e-04
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 8/55 (14%)
Frame = +2
Query: 113 AIQAVLSLYASG-------RT-TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLA 253
A +AVL+L AS RT TG V+DSGDGV+H +P+ EGY + I + +A
Sbjct: 40 ATKAVLALAASWTSRQVGERTLTGCVIDSGDGVTHVIPVAEGYVIGSCIKHIPIA 94
Score = 31.5 bits (68), Expect = 0.63
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +1
Query: 220 SAPRHPPSGLGCRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDLXQEMA 393
S +H P + RD+T ++ ++L ER E + IKE+ Y+ D+ +E A
Sbjct: 86 SCIKHIP--IAGRDITFFVQQLLREREMGIPPEQSMETAKTIKERWGYICPDIAKEFA 141
>SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24)
Length = 766
Score = 34.7 bits (76), Expect = 0.068
Identities = 15/55 (27%), Positives = 31/55 (56%)
Frame = +2
Query: 2 PEEHPVLLTEAPLNPKANREKMTQIMFXTFNSPAMYVAIQAVLSLYASGRTTGIV 166
P +H V++T +E++ +I+ F A+Y+ Q++L++Y+ +GIV
Sbjct: 525 PVKHKVIMTIPQNTGLQEKEELVEILLGYFRVQAVYLQEQSILAMYSYSAVSGIV 579
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 32.3 bits (70), Expect = 0.36
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = +2
Query: 155 TGIVLDSGDGVSHTVPI 205
TG V+DSGDGV+H +P+
Sbjct: 356 TGCVIDSGDGVTHVIPV 372
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 32.3 bits (70), Expect = 0.36
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Frame = +2
Query: 59 EKMTQIMFXTFNSPAMYVAIQAVLSLY------ASGRTTGIVLDSGDGVSHTVPIYEGYA 220
+ M +I+F +N A+ A LS Y S +V+D+G +H VP++ G
Sbjct: 319 DAMDEILFEEYNFKALSRTTAAQLSAYKCHQDMVSKNPVCLVVDTGYSFTHIVPVFNGKV 378
Query: 221 LPHAILR 241
+ A+ R
Sbjct: 379 IKKAVRR 385
>SB_13911| Best HMM Match : PAN (HMM E-Value=0.033)
Length = 534
Score = 31.1 bits (67), Expect = 0.84
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = +2
Query: 50 ANREKMTQIMFXTFNSPAMYVAIQAVLSLYASGRTTGIV 166
A +E++ +I+ F A+Y+ Q++L++Y+ +GIV
Sbjct: 420 AKKEELVEILLGYFRVQAVYLQEQSILAMYSYSAVSGIV 458
>SB_28336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +2
Query: 38 LNPKANREKMTQIMFXTFNSPAMYVAIQAVLSLYASGRTTGIV 166
+ PK ++ ++F F P M +A++ + A+G TGI+
Sbjct: 174 ITPKRATSQIIFVLFCIFGLPVMMLALKTAGDIIAAGLKTGII 216
>SB_55729| Best HMM Match : YajC (HMM E-Value=0.56)
Length = 654
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = -2
Query: 238 EDGVGQSVTFVDGYGVGDTISGVEHDTGGTTGG 140
+DG G VDG GVGD G + D G GG
Sbjct: 9 DDGDGGGDDGVDGGGVGDDGDGDDSDCGDDGGG 41
>SB_3355| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 752
Score = 27.9 bits (59), Expect = 7.8
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 4/82 (4%)
Frame = +1
Query: 187 LPHRTHLRRLRSAPRHPPSGLGCRDLTDYLMKILTERGYSFTTTAEREI----VRDIKEK 354
LP++ LR L S+P G TD L G E + RD+K
Sbjct: 333 LPNKDVLRHLHSSPL----GYISSSNTDLLASSANGDGLYEVAVGEEAVFTVTTRDMKGN 388
Query: 355 LCYVALDLXQEMATAAASTSLE 420
+CY ++D+ T T++E
Sbjct: 389 VCYSSIDILDVQITGEDGTNVE 410
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,156,586
Number of Sequences: 59808
Number of extensions: 382398
Number of successful extensions: 1226
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1210
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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