Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0324
         (662 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              85   4e-19
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    22   6.0  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   6.0  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   7.9  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   7.9  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 85.4 bits (202), Expect = 4e-19
 Identities = 39/41 (95%), Positives = 41/41 (100%)
 Frame = +1

Query: 385 EMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSF 507
           EMATAA+S+SLEKSYELPDGQVITIGNERFRCPEALFQPSF
Sbjct: 1   EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSF 41



 Score = 66.5 bits (155), Expect = 2e-13
 Identities = 34/53 (64%), Positives = 38/53 (71%), Gaps = 1/53 (1%)
 Frame = +3

Query: 495 PAFLPGMESCGIHETVYNSIMKCDVDIRKTC-TPTPSCPVVHMYPGIADRCRR 650
           P+FL GME+CGIHET YNSIMKCDVDIRK     T       MYPGIADR ++
Sbjct: 39  PSFL-GMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQK 90



 Score = 37.1 bits (82), Expect = 1e-04
 Identities = 19/28 (67%), Positives = 22/28 (78%), Gaps = 1/28 (3%)
 Frame = +2

Query: 581 DLYANTVMSGGTHV-PRYRRQMQKEITA 661
           DLYANTV+SGGT + P    +MQKEITA
Sbjct: 67  DLYANTVLSGGTTMYPGIADRMQKEITA 94


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/37 (27%), Positives = 16/37 (43%)
 Frame = -3

Query: 165 TIPVVRPEAYSESTAWMATYMAGELKVXNMIWVIFSL 55
           T+P  + E   +  AWM     G L+  N  +  F +
Sbjct: 33  TLPGYKIECVGDDIAWMKFDKEGRLRAINPEYGFFGV 69


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 247 LGCRDLTDYLMKILTERGYSF 309
           +GC  +TD   KIL   G+ F
Sbjct: 934 VGCIQVTDETRKILEPFGFGF 954


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 11/34 (32%), Positives = 13/34 (38%)
 Frame = -2

Query: 562 HFMMELYTVSWMPHDSIPGRKAGREPRDNGTSRY 461
           H+ M     S  P  + P RK     R   T RY
Sbjct: 384 HWQMSCVACSPPPRQTPPSRKESGRRRRRRTPRY 417


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +1

Query: 412 SLEKSYELPDGQVITIGNERFRCPEALFQPSFRVWNR 522
           S+EK Y LP             CPEA++Q     W +
Sbjct: 850 SIEKGYRLP---------APMDCPEAIYQLMLDCWQK 877


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,050
Number of Sequences: 438
Number of extensions: 3384
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)