Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0323
         (402 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    22   2.6  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   3.4  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     20   7.9  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    20   7.9  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    20   7.9  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    20   7.9  

>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -2

Query: 197 TPLTSAPEAPGINSAILRKLIP 132
           +P TSAP  P I    LRK  P
Sbjct: 93  SPQTSAPTGPPIVRCALRKHKP 114


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 131 EESIYVRLQS*CQELRVLKLRAFVLRLECML 223
           E  +Y+R +  CQE R+ K  +  +R EC++
Sbjct: 231 EIDMYMRRK--CQECRLKKCLSVGMRPECVV 259


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 20.2 bits (40), Expect = 7.9
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 167 GINSAILRKLIPRV 126
           G   AIL+KL+P+V
Sbjct: 653 GTFGAILKKLLPKV 666


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 20.2 bits (40), Expect = 7.9
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +1

Query: 280 PCRRTLKRICPSRNFGSDQILYLNFRLC 363
           P  RT + +  +R  G D +   NF  C
Sbjct: 552 PFERTFRNLDANRPTGGDALSEFNFCGC 579


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 7.9
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -1

Query: 153  NLT*IDSSSQIHFSRVNFEDVQTGLL 76
            N+T I+ +S++H S+   +    GL+
Sbjct: 1304 NITYIEETSEVHISKEYLQLEPIGLV 1329


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 7.9
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -1

Query: 153  NLT*IDSSSQIHFSRVNFEDVQTGLL 76
            N+T I+ +S++H S+   +    GL+
Sbjct: 1304 NITYIEETSEVHISKEYLQLEPIGLV 1329


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,764
Number of Sequences: 336
Number of extensions: 1782
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8646818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)