Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0323
(402 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit, puta... 152 7e-38
At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a) 152 7e-38
At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1... 104 2e-23
At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2... 100 3e-22
At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5... 99 5e-22
At2g20140.1 68415.m02353 26S protease regulatory complex subunit... 99 5e-22
At1g09100.1 68414.m01016 26S protease regulatory subunit 6A, put... 99 5e-22
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4... 98 2e-21
At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit, puta... 98 2e-21
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun... 96 9e-21
At4g23940.1 68417.m03443 FtsH protease, putative contains simila... 85 2e-17
At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3... 78 2e-15
At2g03670.1 68415.m00326 AAA-type ATPase family protein contains... 78 2e-15
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ... 75 2e-14
At3g16290.1 68416.m02056 FtsH protease, putative contains simila... 73 1e-13
At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc... 72 1e-13
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 72 2e-13
At3g56690.1 68416.m06306 calmodulin-binding protein identical to... 71 2e-13
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 71 3e-13
At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH... 70 5e-13
At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc ... 70 5e-13
At1g50250.1 68414.m05634 cell division protein ftsH homolog 1, c... 69 2e-12
At5g15250.1 68418.m01786 FtsH protease, putative similar to FtsH... 68 2e-12
At4g04910.1 68417.m00714 AAA-type ATPase family protein similar ... 67 4e-12
At3g15120.1 68416.m01913 AAA-type ATPase family protein contains... 67 5e-12
At2g29080.1 68415.m03535 FtsH protease, putative similar to AAA-... 66 6e-12
At1g05910.1 68414.m00620 cell division cycle protein 48-related ... 66 6e-12
At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1) id... 66 1e-11
At5g58870.1 68418.m07376 FtsH protease, putative contains simila... 65 1e-11
At1g07510.1 68414.m00804 FtsH protease, putative similar to AAA-... 65 2e-11
At3g47060.1 68416.m05110 FtsH protease, putative contains simila... 64 3e-11
At5g64580.1 68418.m08116 AAA-type ATPase family protein similar ... 61 3e-10
At3g01610.1 68416.m00092 AAA-type ATPase family protein contains... 60 4e-10
At5g53170.1 68418.m06610 FtsH protease, putative similar to ATP-... 59 9e-10
At2g26140.1 68415.m03137 FtsH protease, putative contains simila... 57 4e-09
At1g79560.1 68414.m09275 FtsH protease, putative contains simila... 56 7e-09
At3g02450.1 68416.m00232 cell division protein ftsH, putative si... 54 3e-08
At1g03000.1 68414.m00271 AAA-type ATPase family protein contains... 51 3e-07
At2g45500.1 68415.m05659 AAA-type ATPase family protein similar ... 37 0.004
At2g46620.1 68415.m05815 AAA-type ATPase family protein contains... 32 0.12
At2g18330.1 68415.m02136 AAA-type ATPase family protein contains... 32 0.12
At5g40010.1 68418.m04852 AAA-type ATPase family protein contains... 31 0.38
At4g36580.1 68417.m05193 AAA-type ATPase family protein contains... 30 0.50
At3g28580.1 68416.m03568 AAA-type ATPase family protein contains... 30 0.50
At5g17760.1 68418.m02082 AAA-type ATPase family protein contains... 30 0.66
At5g16930.1 68418.m01984 AAA-type ATPase family protein contains... 30 0.66
At3g04340.1 68416.m00459 FtsH protease family protein similar to... 30 0.66
At3g28510.1 68416.m03561 AAA-type ATPase family protein contains... 29 1.2
At3g03060.1 68416.m00302 AAA-type ATPase family protein contains... 29 1.2
At5g42580.1 68418.m05184 cytochrome P450 family protein similar ... 29 1.5
At5g17740.1 68418.m02080 AAA-type ATPase family protein h-bcs1, ... 29 1.5
At5g17730.1 68418.m02079 AAA-type ATPase family protein contains... 29 1.5
At3g50940.1 68416.m05577 AAA-type ATPase family protein contains... 29 1.5
At3g28540.1 68416.m03564 AAA-type ATPase family protein contains... 29 1.5
At2g18190.1 68415.m02116 AAA-type ATPase family protein contains... 29 1.5
At3g28520.1 68416.m03562 AAA-type ATPase family protein contains... 28 2.0
At4g05380.1 68417.m00820 AAA-type ATPase family protein contains... 28 2.7
At2g18193.1 68415.m02117 AAA-type ATPase family protein contains... 28 2.7
At1g43910.1 68414.m05066 AAA-type ATPase family protein contains... 28 2.7
At5g17750.1 68418.m02081 AAA-type ATPase family protein contains... 27 3.5
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 27 3.5
At5g15850.1 68418.m01854 zinc finger protein CONSTANS-LIKE 1 (CO... 27 4.7
At4g27430.1 68417.m03942 COP1-interacting protein 7 (CIP7) ident... 27 4.7
At4g05340.1 68417.m00816 hypothetical protein 27 4.7
At2g30970.1 68415.m03777 aspartate aminotransferase, mitochondri... 27 4.7
At1g55590.1 68414.m06363 F-box family protein ; similar to SKP1... 27 4.7
At5g57480.1 68418.m07183 AAA-type ATPase family protein contains... 27 6.2
At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1 nuc... 27 6.2
At4g25835.1 68417.m03716 AAA-type ATPase family protein contains... 27 6.2
At4g01090.1 68417.m00147 extra-large G-protein-related contains ... 27 6.2
At3g48820.2 68416.m05332 glycosyl transferase family 29 protein ... 27 6.2
At3g48820.1 68416.m05331 glycosyl transferase family 29 protein ... 27 6.2
At3g28610.1 68416.m03571 AAA-type ATPase family protein contains... 26 8.2
At3g28600.1 68416.m03570 AAA-type ATPase family protein contains... 26 8.2
>At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit,
putative almost identical to 26S proteasome AAA-ATPase
subunit RPT6a GI:6652888 from [Arabidopsis thaliana];
almost identical to a member of conserved Sug1 CAD
family AtSUG1 GI:13537115 from [Arabidopsis thaliana]
Length = 419
Score = 152 bits (369), Expect = 7e-38
Identities = 74/101 (73%), Positives = 84/101 (83%)
Frame = +1
Query: 1 RIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASG 180
RIDILD ALLRPGRIDRKIEFP PNEE+R DILKIHSRKMNL RGI+L+KIAE M GASG
Sbjct: 310 RIDILDQALLRPGRIDRKIEFPNPNEESRFDILKIHSRKMNLMRGIDLKKIAEKMNGASG 369
Query: 181 AEVKGVCTEAGMYALRERRVHVTQETLKWLSLKPCRRTLKR 303
AE+K VCTEAGM+ALRERRVHVTQE + K ++ ++
Sbjct: 370 AELKAVCTEAGMFALRERRVHVTQEDFEMAVAKVMKKDTEK 410
Score = 48.8 bits (111), Expect = 1e-06
Identities = 20/25 (80%), Positives = 24/25 (96%)
Frame = +3
Query: 255 DFEMAVAKAMQKDSEKNMSIKKLWK 329
DFEMAVAK M+KD+EKNMS++KLWK
Sbjct: 395 DFEMAVAKVMKKDTEKNMSLRKLWK 419
>At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)
Length = 419
Score = 152 bits (369), Expect = 7e-38
Identities = 74/101 (73%), Positives = 84/101 (83%)
Frame = +1
Query: 1 RIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASG 180
RIDILD ALLRPGRIDRKIEFP PNEE+R DILKIHSRKMNL RGI+L+KIAE M GASG
Sbjct: 310 RIDILDQALLRPGRIDRKIEFPNPNEESRFDILKIHSRKMNLMRGIDLKKIAEKMNGASG 369
Query: 181 AEVKGVCTEAGMYALRERRVHVTQETLKWLSLKPCRRTLKR 303
AE+K VCTEAGM+ALRERRVHVTQE + K ++ ++
Sbjct: 370 AELKAVCTEAGMFALRERRVHVTQEDFEMAVAKVMKKDTEK 410
Score = 48.8 bits (111), Expect = 1e-06
Identities = 20/25 (80%), Positives = 24/25 (96%)
Frame = +3
Query: 255 DFEMAVAKAMQKDSEKNMSIKKLWK 329
DFEMAVAK M+KD+EKNMS++KLWK
Sbjct: 395 DFEMAVAKVMKKDTEKNMSLRKLWK 419
>At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1a)
similar to 26S proteasome ATPase subunit GI:1395190 from
[Spinacia oleracea]
Length = 426
Score = 104 bits (250), Expect = 2e-23
Identities = 48/85 (56%), Positives = 62/85 (72%)
Frame = +1
Query: 1 RIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASG 180
R D LDPALLRPGR+DRK+EF P+ E+R I KIH+R MN R I +A L P ++G
Sbjct: 316 RPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTG 375
Query: 181 AEVKGVCTEAGMYALRERRVHVTQE 255
A+++ VCTEAGMYA+R RR VT++
Sbjct: 376 ADIRSVCTEAGMYAIRARRKTVTEK 400
>At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2a)
almost identical to 26S proteasome AAA-ATPase subunit
RPT2a (GI:6652880) {Arabidopsis thaliana}; Drosophila
melanogaster 26S proteasome subunit 4 ATPase,
PID:g1066065
Length = 443
Score = 100 bits (240), Expect = 3e-22
Identities = 48/88 (54%), Positives = 61/88 (69%)
Frame = +1
Query: 1 RIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASG 180
RI+ LDPALLRPGRIDRKIEFP P+ + R I +IH+ KM L+ +NL + SG
Sbjct: 336 RIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLSEDVNLEEFVMTKDEFSG 395
Query: 181 AEVKGVCTEAGMYALRERRVHVTQETLK 264
A++K +CTEAG+ ALRERR+ VT K
Sbjct: 396 ADIKAICTEAGLLALRERRMKVTHPDFK 423
>At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5a)
identical to GB:AAF22525 GI:6652886 from [Arabidopsis
thaliana]
Length = 424
Score = 99 bits (238), Expect = 5e-22
Identities = 48/85 (56%), Positives = 58/85 (68%)
Frame = +1
Query: 1 RIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASG 180
R DILDPAL+R GR+DRKIEFP P EEAR IL+IHSRKMN+ +N ++A +G
Sbjct: 319 RADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNG 378
Query: 181 AEVKGVCTEAGMYALRERRVHVTQE 255
A++K VC EAGM ALR V E
Sbjct: 379 AQLKAVCVEAGMLALRRDATEVNHE 403
>At2g20140.1 68415.m02353 26S protease regulatory complex subunit 4,
putative similar to Swiss-Prot:P48601 26S protease
regulatory subunit 4 (P26S4) [Drosophila melanogaster]
Length = 443
Score = 99 bits (238), Expect = 5e-22
Identities = 48/88 (54%), Positives = 60/88 (68%)
Frame = +1
Query: 1 RIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASG 180
RI+ LDPALLRPGRIDRKIEFP P+ + R I +IH+ KM L +NL + SG
Sbjct: 336 RIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLAEDVNLEEFVMTKDEFSG 395
Query: 181 AEVKGVCTEAGMYALRERRVHVTQETLK 264
A++K +CTEAG+ ALRERR+ VT K
Sbjct: 396 ADIKAICTEAGLLALRERRMKVTHVDFK 423
>At1g09100.1 68414.m01016 26S protease regulatory subunit 6A,
putative identical to SP:O04019 from [Arabidopsis
thaliana]
Length = 423
Score = 99 bits (238), Expect = 5e-22
Identities = 48/85 (56%), Positives = 58/85 (68%)
Frame = +1
Query: 1 RIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASG 180
R DILDPAL+R GR+DRKIEFP P EEAR IL+IHSRKMN+ +N ++A +G
Sbjct: 318 RADILDPALMRSGRLDRKIEFPHPTEEARGRILQIHSRKMNVNADVNFEELARSTDDFNG 377
Query: 181 AEVKGVCTEAGMYALRERRVHVTQE 255
A++K VC EAGM ALR V E
Sbjct: 378 AQLKAVCVEAGMLALRRDATEVNHE 402
>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
gb|AAF22524.1
Length = 399
Score = 98.3 bits (234), Expect = 2e-21
Identities = 45/85 (52%), Positives = 62/85 (72%)
Frame = +1
Query: 1 RIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASG 180
R D+LDPALLRPGR+DRKIE P PNE++R+DILKIH+ + I+ I +L G +G
Sbjct: 287 RPDVLDPALLRPGRLDRKIEIPLPNEQSRMDILKIHAAGIAKHGEIDYEAIVKLAEGFNG 346
Query: 181 AEVKGVCTEAGMYALRERRVHVTQE 255
A+++ +CTEAGM+A+R R +V E
Sbjct: 347 ADLRNICTEAGMFAIRAERDYVIHE 371
>At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit,
putative similar to 26S proteasome AAA-ATPase subunit
RPT1 SP:Q41365 from [Spinacia oleracea]
Length = 464
Score = 98.3 bits (234), Expect = 2e-21
Identities = 46/85 (54%), Positives = 60/85 (70%)
Frame = +1
Query: 1 RIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASG 180
R DILDPALLRPGR+DRK+EF P+ E R I KIH+R M+ R I +A L P ++G
Sbjct: 353 RPDILDPALLRPGRLDRKVEFCLPDLEGRTQIFKIHTRTMSCERDIRFELLAGLCPNSTG 412
Query: 181 AEVKGVCTEAGMYALRERRVHVTQE 255
A+++ VC EAGMYA+ RR VT++
Sbjct: 413 ADIRSVCIEAGMYAIGARRKSVTEK 437
>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
p42D, putative similar to 26S proteasome regulatory
complex subunit p42D [Drosophila melanogaster]
gi|6434958|gb|AAF08391
Length = 399
Score = 95.9 bits (228), Expect = 9e-21
Identities = 44/85 (51%), Positives = 62/85 (72%)
Frame = +1
Query: 1 RIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASG 180
R D+LDPALLRPGR+DRKIE P PNE++R++ILKIH+ + I+ I +L G +G
Sbjct: 287 RPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHASGIAKHGEIDYEAIVKLGEGFNG 346
Query: 181 AEVKGVCTEAGMYALRERRVHVTQE 255
A+++ +CTEAGM+A+R R +V E
Sbjct: 347 ADLRNICTEAGMFAIRAERDYVIHE 371
>At4g23940.1 68417.m03443 FtsH protease, putative contains
similarity to zinc dependent protease GI:7650138 from
[Arabidopsis thaliana]
Length = 946
Score = 85.0 bits (201), Expect = 2e-17
Identities = 40/87 (45%), Positives = 57/87 (65%)
Frame = +1
Query: 1 RIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASG 180
R D+LDPALLRPGR DRKI PPN + RLDILKIH+ K+ ++ ++L A +PG SG
Sbjct: 585 RRDLLDPALLRPGRFDRKIRVRPPNAKGRLDILKIHASKVKMSDSVDLSSYASNLPGWSG 644
Query: 181 AEVKGVCTEAGMYALRERRVHVTQETL 261
A++ + EA + A+R+ + Q +
Sbjct: 645 AKLAQLVQEAALVAVRKTHNSILQSDM 671
>At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3)
identical to 26S proteasome AAA-ATPase subunit RPT3
GI:6652882 from [Arabidopsis thaliana]
Length = 408
Score = 78.2 bits (184), Expect = 2e-15
Identities = 36/79 (45%), Positives = 51/79 (64%)
Frame = +1
Query: 1 RIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASG 180
R D LDPALLRPGR+DRKIEFP P+ + + ++ + KMNL+ ++L S
Sbjct: 303 RADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTSKMNLSDEVDLEDYVSRPDKISA 362
Query: 181 AEVKGVCTEAGMYALRERR 237
AE+ +C EAGM+A+R+ R
Sbjct: 363 AEIAAICQEAGMHAVRKNR 381
>At2g03670.1 68415.m00326 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 603
Score = 78.2 bits (184), Expect = 2e-15
Identities = 36/73 (49%), Positives = 52/73 (71%)
Frame = +1
Query: 13 LDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVK 192
+D AL+RPGR D + PPP+ EAR +IL++H+R M L ++LRKIAE +GAE++
Sbjct: 439 IDAALMRPGRFDLVLYVPPPDLEARFEILQVHTRNMTLGDDVDLRKIAEETDLFTGAELE 498
Query: 193 GVCTEAGMYALRE 231
G+C E+G +LRE
Sbjct: 499 GLCRESGTVSLRE 511
Score = 67.7 bits (158), Expect = 3e-12
Identities = 32/74 (43%), Positives = 49/74 (66%)
Frame = +1
Query: 1 RIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASG 180
R+D +DPAL R GR D +E PNEE RL IL+++++K+NL ++L+ IA G G
Sbjct: 173 RVDAIDPALRRAGRFDALVEVSTPNEEDRLKILQLYTKKVNLDPSVDLQAIAISCNGYVG 232
Query: 181 AEVKGVCTEAGMYA 222
A+++ +C EA + A
Sbjct: 233 ADLEALCREATISA 246
>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain
Length = 815
Score = 74.9 bits (176), Expect = 2e-14
Identities = 35/77 (45%), Positives = 51/77 (66%)
Frame = +1
Query: 1 RIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASG 180
R DI+DPALLRPGR+D+ I P P+EE+R I K RK + + ++LR +A+ G SG
Sbjct: 629 RPDIIDPALLRPGRLDQLIYIPLPDEESRYQIFKSCLRKSPVAKDVDLRALAKYTQGFSG 688
Query: 181 AEVKGVCTEAGMYALRE 231
A++ +C + YA+RE
Sbjct: 689 ADITEICQRSCKYAIRE 705
Score = 69.3 bits (162), Expect = 9e-13
Identities = 30/78 (38%), Positives = 52/78 (66%)
Frame = +1
Query: 1 RIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASG 180
R + +DPAL R GR DR+I+ P+E RL++L+IH++ M L ++L ++++ G G
Sbjct: 353 RPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERVSKDTHGYVG 412
Query: 181 AEVKGVCTEAGMYALRER 234
A++ +CTEA + +RE+
Sbjct: 413 ADLAALCTEAALQCIREK 430
>At3g16290.1 68416.m02056 FtsH protease, putative contains
similarity to cell division protein FtsH GI:1652085 from
[Synechocystis sp. PCC 6803]
Length = 876
Score = 72.5 bits (170), Expect = 1e-13
Identities = 34/87 (39%), Positives = 52/87 (59%)
Frame = +1
Query: 1 RIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASG 180
R DILDPAL+RPGR DRKI P P R++IL++H+RK + ++ +A + G G
Sbjct: 557 RPDILDPALVRPGRFDRKIFIPKPGLIGRMEILQVHARKKPMAEDLDYMAVASMTDGMVG 616
Query: 181 AEVKGVCTEAGMYALRERRVHVTQETL 261
AE+ + A + +R+ R +T + L
Sbjct: 617 AELANIVEIAAINMMRDGRTELTTDDL 643
>At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc
dependent protease GI:7650138 from [Arabidopsis
thaliana]
Length = 685
Score = 72.1 bits (169), Expect = 1e-13
Identities = 35/87 (40%), Positives = 51/87 (58%)
Frame = +1
Query: 1 RIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASG 180
R DILD ALLRPGR DR++ P+ + R DILK+HS G++L IA PG SG
Sbjct: 367 RADILDSALLRPGRFDRQVSVDVPDVKGRTDILKVHSGNKKFESGVSLEVIAMRTPGFSG 426
Query: 181 AEVKGVCTEAGMYALRERRVHVTQETL 261
A++ + EA + A R + ++ + +
Sbjct: 427 ADLANLLNEAAILAGRRGKTAISSKEI 453
>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
(CDC48) identical to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}
Length = 809
Score = 71.7 bits (168), Expect = 2e-13
Identities = 33/77 (42%), Positives = 51/77 (66%)
Frame = +1
Query: 1 RIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASG 180
R DI+D ALLRPGR+D+ I P P+E++RL+I K RK + + +++ +A+ G SG
Sbjct: 629 RPDIIDSALLRPGRLDQLIYIPLPDEDSRLNIFKAALRKSPIAKDVDIGALAKYTQGFSG 688
Query: 181 AEVKGVCTEAGMYALRE 231
A++ +C A YA+RE
Sbjct: 689 ADITEICQRACKYAIRE 705
Score = 69.7 bits (163), Expect = 7e-13
Identities = 31/78 (39%), Positives = 52/78 (66%)
Frame = +1
Query: 1 RIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASG 180
R + +DPAL R GR DR+I+ P+E RL++L+IH++ M L ++L +I++ G G
Sbjct: 352 RPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERISKDTHGYVG 411
Query: 181 AEVKGVCTEAGMYALRER 234
A++ +CTEA + +RE+
Sbjct: 412 ADLAALCTEAALQCIREK 429
>At3g56690.1 68416.m06306 calmodulin-binding protein identical to
calmodulin-binding protein GI:6760428 from [Arabidopsis
thaliana]
Length = 1022
Score = 71.3 bits (167), Expect = 2e-13
Identities = 36/77 (46%), Positives = 49/77 (63%)
Frame = +1
Query: 1 RIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASG 180
R D +D ALLRPGR DR + PPNE R ILKIH RK+ + I L+++A + G +G
Sbjct: 871 RPDKIDSALLRPGRFDRLLYVGPPNETDREAILKIHLRKIPCSSDICLKELASITKGYTG 930
Query: 181 AEVKGVCTEAGMYALRE 231
A++ +C EA + AL E
Sbjct: 931 ADISLICREAAIAALEE 947
Score = 55.2 bits (127), Expect = 2e-08
Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Frame = +1
Query: 1 RIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKM-NLTRGINLRKIAELMPGAS 177
R D ++PAL RPGR+DR+IE P+ R DIL I R M + I + ++A G
Sbjct: 529 RPDSIEPALRRPGRLDREIEIGVPSSTQRSDILHIILRGMRHSLSNIQVEQLAMATHGFV 588
Query: 178 GAEVKGVCTEAGMYALR 228
GA++ +C EA LR
Sbjct: 589 GADLSALCCEAAFVCLR 605
>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain; supporting cDNA
gi|26449351|dbj|AK117125.1|
Length = 810
Score = 70.9 bits (166), Expect = 3e-13
Identities = 33/77 (42%), Positives = 51/77 (66%)
Frame = +1
Query: 1 RIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASG 180
R DI+D ALLRPGR+D+ I P P+E++RL+I K RK + + +++ +A+ G SG
Sbjct: 628 RPDIIDSALLRPGRLDQLIYIPLPDEDSRLNIFKACLRKSPVAKDVDVTALAKYTQGFSG 687
Query: 181 AEVKGVCTEAGMYALRE 231
A++ +C A YA+RE
Sbjct: 688 ADITEICQRACKYAIRE 704
Score = 69.7 bits (163), Expect = 7e-13
Identities = 31/78 (39%), Positives = 52/78 (66%)
Frame = +1
Query: 1 RIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASG 180
R + +DPAL R GR DR+I+ P+E RL++L+IH++ M L ++L +I++ G G
Sbjct: 352 RPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERISKDTHGYVG 411
Query: 181 AEVKGVCTEAGMYALRER 234
A++ +CTEA + +RE+
Sbjct: 412 ADLAALCTEAALQCIREK 429
>At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH
protease GI:13183728 from [Medicago sativa]
Length = 704
Score = 70.1 bits (164), Expect = 5e-13
Identities = 31/87 (35%), Positives = 53/87 (60%)
Frame = +1
Query: 1 RIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASG 180
R D+LD ALLRPGR DR++ P+ R+ ILK+HSR + + ++ K+A PG +G
Sbjct: 397 RPDVLDSALLRPGRFDRQVTVDRPDVAGRVQILKVHSRGKAIGKDVDYEKVARRTPGFTG 456
Query: 181 AEVKGVCTEAGMYALRERRVHVTQETL 261
A+++ + EA + A R ++++ +
Sbjct: 457 ADLQNLMNEAAILAARRELKEISKDEI 483
>At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc
dependent protease VAR2 GI:7650138 from [Arabidopsis
thaliana]
Length = 695
Score = 70.1 bits (164), Expect = 5e-13
Identities = 34/87 (39%), Positives = 50/87 (57%)
Frame = +1
Query: 1 RIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASG 180
R DILD ALLRPGR DR++ P+ + R DILK+H+ ++L IA PG SG
Sbjct: 374 RADILDSALLRPGRFDRQVSVDVPDVKGRTDILKVHAGNKKFDNDVSLEIIAMRTPGFSG 433
Query: 181 AEVKGVCTEAGMYALRERRVHVTQETL 261
A++ + EA + A R R ++ + +
Sbjct: 434 ADLANLLNEAAILAGRRARTSISSKEI 460
>At1g50250.1 68414.m05634 cell division protein ftsH homolog 1,
chloroplast (FTSH1) (FTSH) identical to SP:Q39102 Cell
division protein ftsH homolog 1, chloroplast
precursor (EC 3.4.24.-) [Arabidopsis thaliana]
Length = 716
Score = 68.5 bits (160), Expect = 2e-12
Identities = 31/87 (35%), Positives = 53/87 (60%)
Frame = +1
Query: 1 RIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASG 180
R D+LD ALLRPGR DR++ P+ R+ IL++HSR L + ++ K+A PG +G
Sbjct: 409 RPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALGKDVDFDKVARRTPGFTG 468
Query: 181 AEVKGVCTEAGMYALRERRVHVTQETL 261
A+++ + EA + A R ++++ +
Sbjct: 469 ADLQNLMNEAAILAARRELKEISKDEI 495
>At5g15250.1 68418.m01786 FtsH protease, putative similar to
FtsH-like protein Pftf precursor GI:4325041 from
[Nicotiana tabacum]
Length = 687
Score = 68.1 bits (159), Expect = 2e-12
Identities = 35/83 (42%), Positives = 50/83 (60%)
Frame = +1
Query: 1 RIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASG 180
R +ILD ALLRPGR DR++ P+ R +ILK+HSR L + ++L IA PG SG
Sbjct: 370 RPEILDSALLRPGRFDRQVSVGLPDIRGREEILKVHSRSKKLDKDVSLSVIAMRTPGFSG 429
Query: 181 AEVKGVCTEAGMYALRERRVHVT 249
A++ + EA + A R + +T
Sbjct: 430 ADLANLMNEAAILAGRRGKDKIT 452
>At4g04910.1 68417.m00714 AAA-type ATPase family protein similar to
SP|P18708 Vesicular-fusion protein NSF
(N-ethylmaleimide-sensitive fusion protein)
(NEM-sensitive fusion protein) {Cricetulus griseus};
contains Pfam profiles PF00004: ATPase AAA family,
PF02359: Cell division protein 48 (CDC48) N-terminal
domain; contains non-consensus AT-AC splice sites at
intron 2
Length = 742
Score = 67.3 bits (157), Expect = 4e-12
Identities = 37/82 (45%), Positives = 51/82 (62%), Gaps = 4/82 (4%)
Frame = +1
Query: 1 RIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMN----LTRGINLRKIAELMP 168
R D+LD ALLRPGR++ ++E P+E RL IL+IH+ KM L INL+++A
Sbjct: 372 RKDLLDEALLRPGRLEVQVEISLPDEAGRLQILQIHTNKMKENSFLGTDINLQELAARTK 431
Query: 169 GASGAEVKGVCTEAGMYALRER 234
SGAE++GV A YAL +
Sbjct: 432 NYSGAELEGVVKSATSYALNRQ 453
>At3g15120.1 68416.m01913 AAA-type ATPase family protein contains
PROSITE domains, PS00674: AAA-protein family signature
and PS00017: ATP/GTP-binding site motif A (P-loop)
Length = 1954
Score = 66.9 bits (156), Expect = 5e-12
Identities = 37/86 (43%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Frame = +1
Query: 7 DILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKM-NLTRGINLRKIAELMPGASGA 183
D +DPAL RPGR DR+I FP P+ + R I+ +H+RK G L+ IA+ G +GA
Sbjct: 871 DAIDPALRRPGRFDREIYFPLPSVDDRAAIISLHTRKWPKPVSGYLLKWIAKETAGFAGA 930
Query: 184 EVKGVCTEAGMYALRERRVHVTQETL 261
+++ +CT+A M AL R QE+L
Sbjct: 931 DIQALCTQAAMIAL--NRSFPLQESL 954
>At2g29080.1 68415.m03535 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 809
Score = 66.5 bits (155), Expect = 6e-12
Identities = 36/85 (42%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Frame = +1
Query: 1 RIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTR--GINLRKIAELMPGA 174
R DILD ALLRPGR DR+I P+ + R I KI+ +K+ L +++A L PG
Sbjct: 469 RPDILDKALLRPGRFDRQITIDKPDIKGRDQIFKIYLKKIKLDHEPSYYSQRLAALTPGF 528
Query: 175 SGAEVKGVCTEAGMYALRERRVHVT 249
+GA++ VC EA + A R VT
Sbjct: 529 AGADIANVCNEAALIAARHEGATVT 553
>At1g05910.1 68414.m00620 cell division cycle protein 48-related /
CDC48-related similar to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}; contains Pfam
profiles PF00004: ATPase AAA family, PF00439:
Bromodomain
Length = 1210
Score = 66.5 bits (155), Expect = 6e-12
Identities = 35/79 (44%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Frame = +1
Query: 1 RIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLR-KIAELMPGAS 177
R+D +D AL RPGR DR+ F P EAR +IL IH+RK L+ ++A G
Sbjct: 531 RVDAIDGALRRPGRFDREFNFSLPGCEARAEILDIHTRKWKHPPTRELKEELAATCVGYC 590
Query: 178 GAEVKGVCTEAGMYALRER 234
GA++K +CTEA + A RE+
Sbjct: 591 GADLKALCTEAAIRAFREK 609
>At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1)
identical to peroxisome biogenesis protein PEX1
[Arabidopsis thaliana] gi|12006272|gb|AAG44817; contains
Pfam profile PF00004: ATPase, AAA family; identical to
cDNA peroxisome biogenesis protein PEX1 (PEX1) mRNA,
partial cds GI:12006271
Length = 1130
Score = 65.7 bits (153), Expect = 1e-11
Identities = 36/79 (45%), Positives = 54/79 (68%), Gaps = 2/79 (2%)
Frame = +1
Query: 1 RIDILDPALLRPGRIDRKI--EFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGA 174
R D+LDPALLRPGR+DR + +FP P E RL+IL + SRK+ + I+L IA + G
Sbjct: 989 RPDLLDPALLRPGRLDRLLLCDFPSPPE--RLEILTVLSRKLLMADDIDLEPIALMTEGF 1046
Query: 175 SGAEVKGVCTEAGMYALRE 231
SGA+++ + ++A + A+ E
Sbjct: 1047 SGADLQALLSDAQLAAVHE 1065
>At5g58870.1 68418.m07376 FtsH protease, putative contains
similarity to cell division protein FtsH homolog 3
SP:P73437 (EC 3.4.24.-) [strain PCC6803] {Synechocystis
sp.}
Length = 806
Score = 65.3 bits (152), Expect = 1e-11
Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Frame = +1
Query: 1 RIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRG--INLRKIAELMPGA 174
R D+LDPAL RPGR DR + P++ R ILK+H K L G +NL IA + G
Sbjct: 477 RADVLDPALRRPGRFDRVVTVESPDKVGRESILKVHVSKKELPLGDDVNLASIASMTTGF 536
Query: 175 SGAEVKGVCTEAGMYALRERRVHV 246
+GA++ + EA + A R+ ++ V
Sbjct: 537 TGADLANLVNEAALLAGRKSKMTV 560
>At1g07510.1 68414.m00804 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 813
Score = 64.9 bits (151), Expect = 2e-11
Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Frame = +1
Query: 1 RIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTR--GINLRKIAELMPGA 174
R DILD ALLRPGR DR+I P+ + R I +I+ +K+ L +++A L PG
Sbjct: 475 RPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKIKLDHEPSYYSQRLAALTPGF 534
Query: 175 SGAEVKGVCTEAGMYALRERRVHVT 249
+GA++ VC EA + A R VT
Sbjct: 535 AGADIANVCNEAALIAARHEGATVT 559
>At3g47060.1 68416.m05110 FtsH protease, putative contains
similarity to FtsH protease GI:13183728 from [Medicago
sativa]
Length = 802
Score = 64.5 bits (150), Expect = 3e-11
Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Frame = +1
Query: 1 RIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRG--INLRKIAELMPGA 174
R D+LDPAL RPGR DR + P++ R IL++H K L G +NL IA + G
Sbjct: 473 RADVLDPALRRPGRFDRVVTVETPDKIGRESILRVHVSKKELPLGDDVNLGSIASMTTGF 532
Query: 175 SGAEVKGVCTEAGMYALRERRVHV 246
+GA++ + EA + A R+ + +V
Sbjct: 533 TGADLANLVNEAALLAGRKNKTNV 556
>At5g64580.1 68418.m08116 AAA-type ATPase family protein similar to
zinc dependent protease [Arabidopsis thaliana]
GI:7650138; contains Pfam profile PF00004: ATPase AAA
family
Length = 855
Score = 60.9 bits (141), Expect = 3e-10
Identities = 35/91 (38%), Positives = 55/91 (60%), Gaps = 4/91 (4%)
Frame = +1
Query: 1 RIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSR----KMNLTRGINLRKIAELMP 168
R+DILDPALLR GR D+ I P+++ RL ILK+H+R + + L+++AE
Sbjct: 465 RLDILDPALLRKGRFDKIIRVGLPSKDGRLAILKVHARNKFFRSEDEKEELLQEVAENTE 524
Query: 169 GASGAEVKGVCTEAGMYALRERRVHVTQETL 261
+GAE++ V EAG+ R+ ++ +E L
Sbjct: 525 DFTGAELQNVLNEAGILTARKDLDYIGREEL 555
>At3g01610.1 68416.m00092 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 820
Score = 60.5 bits (140), Expect = 4e-10
Identities = 30/76 (39%), Positives = 47/76 (61%)
Frame = +1
Query: 1 RIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASG 180
R D LDPAL R GR + +I P+E+AR +IL + ++K+ L + ++IA L PG G
Sbjct: 388 RPDALDPALRRSGRFETEIALTAPDEDARAEILSVVAQKLRLEGPFDKKRIARLTPGFVG 447
Query: 181 AEVKGVCTEAGMYALR 228
A+++ V AG A++
Sbjct: 448 ADLESVAYLAGRKAIK 463
Score = 50.4 bits (115), Expect = 4e-07
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Frame = +1
Query: 1 RIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAE-LMPGAS 177
R D++DPA LRPGR + P PN + R ILK +RK + ++L IA+ G S
Sbjct: 672 RPDVVDPAFLRPGRFGNLLYVPLPNADERASILKAIARKKPIDPSVDLDGIAKNNCEGFS 731
Query: 178 GAEVKGVCTEAGMYALRE 231
GA++ + +A A+ E
Sbjct: 732 GADLAHLVQKATFQAVEE 749
>At5g53170.1 68418.m06610 FtsH protease, putative similar to
ATP-dependent metalloprotease FtsH1 GI:3600100 from [Mus
musculus]
Length = 806
Score = 59.3 bits (137), Expect = 9e-10
Identities = 30/87 (34%), Positives = 51/87 (58%)
Frame = +1
Query: 7 DILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAE 186
DILDPAL RPGR DR I P P+ R +IL+++ + ++ ++++ IA PG +GA+
Sbjct: 507 DILDPALTRPGRFDRHIVVPSPDVRGREEILELYLQGKPMSEDVDVKAIARGTPGFNGAD 566
Query: 187 VKGVCTEAGMYALRERRVHVTQETLKW 267
+ + A + A E ++ E L++
Sbjct: 567 LANLVNIAAIKAAVEGAEKLSSEQLEF 593
>At2g26140.1 68415.m03137 FtsH protease, putative contains
similarity to YME1 GI:295582, a member of the
ftsH-SEC18-PAS1-CDC48 family of putative ATPase-encoding
genes from [Saccharomyces cerevisiae]
Length = 717
Score = 57.2 bits (132), Expect = 4e-09
Identities = 32/85 (37%), Positives = 45/85 (52%)
Frame = +1
Query: 13 LDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVK 192
LD AL+RPGR DR I P P+ E R IL+ H K+ ++L IA PG SGA++
Sbjct: 375 LDKALVRPGRFDRHIVVPNPDVEGRRQILESHMSKVLKAEDVDLMIIARGTPGFSGADLA 434
Query: 193 GVCTEAGMYALRERRVHVTQETLKW 267
+ A + A + VT L++
Sbjct: 435 NLVNVAALKAAMDGSKDVTMSDLEF 459
>At1g79560.1 68414.m09275 FtsH protease, putative contains
similarity to chloroplast FtsH protease GI:5804782 from
[Nicotiana tabacum]
Length = 1008
Score = 56.4 bits (130), Expect = 7e-09
Identities = 28/87 (32%), Positives = 49/87 (56%)
Frame = +1
Query: 1 RIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASG 180
R D LD +R GRIDR++ P+ + R+ I +HS NL I+ K+ G SG
Sbjct: 644 RPDELDLEFVRSGRIDRRLYIGLPDAKQRVQIFGVHSAGKNLAEDIDFGKLVFRTVGFSG 703
Query: 181 AEVKGVCTEAGMYALRERRVHVTQETL 261
A+++ + EA + ++R+ R ++ Q+ +
Sbjct: 704 ADIRNLVNEAAIMSVRKGRSYIYQQDI 730
>At3g02450.1 68416.m00232 cell division protein ftsH, putative
similar to SWISS-PROT:P46469 cell division protein ftsH
homolog [Lactococcus lactis]; contains Pfam domain,
PF00004: ATPase, AAA family ('A'TPases 'A'ssociated with
diverse cellular 'A'ctivities)
Length = 622
Score = 54.4 bits (125), Expect = 3e-08
Identities = 33/89 (37%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Frame = +1
Query: 1 RIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINL--RKIAELMPGA 174
R + LD AL RPGR RK+ P++E R IL IH R + L L +A L PG
Sbjct: 478 RPEALDSALCRPGRFSRKVLVAEPDQEGRRKILAIHLRDVPLEEDAFLICDLVASLTPGF 537
Query: 175 SGAEVKGVCTEAGMYALRERRVHVTQETL 261
GA++ + EA + A R V +E +
Sbjct: 538 VGADLANIVNEAALLAARRGGEAVAREDI 566
>At1g03000.1 68414.m00271 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 941
Score = 50.8 bits (116), Expect = 3e-07
Identities = 29/81 (35%), Positives = 48/81 (59%), Gaps = 3/81 (3%)
Frame = +1
Query: 1 RIDILDPALLRPGRIDRKIEFPPPNEEA--RLDILKIHSRKMNLTRGINLRKIAELMPGA 174
R D++DPALLRPGR D K+ + N +A R +LK +RK L+ ++L +A+ P
Sbjct: 805 RPDLIDPALLRPGRFD-KLLYVGVNADASYRERVLKALTRKFKLSEDVSLYSVAKKCPST 863
Query: 175 -SGAEVKGVCTEAGMYALRER 234
+GA++ +C +A A + +
Sbjct: 864 FTGADMYALCADAWFQAAKRK 884
>At2g45500.1 68415.m05659 AAA-type ATPase family protein similar to
SP|Q9QYY8 Spastin (Fragment) {Mus musculus}; contains
Pfam profiles PF00004: ATPase AAA family, PF04212: MIT
domain
Length = 487
Score = 37.1 bits (82), Expect = 0.004
Identities = 33/106 (31%), Positives = 58/106 (54%), Gaps = 5/106 (4%)
Frame = +1
Query: 13 LDPALLRPGRIDRKIEFPPPNEEAR--LDILKIHSRKMNLTRGINLRKIAELMPGASGAE 186
LD A+LR R+ ++I P P+ R L K+ + +L+ G ++ KI + G SG++
Sbjct: 366 LDDAVLR--RLVKRIYVPLPDSNVRKLLFKTKLKCQPHSLSDG-DIDKIVKETEGYSGSD 422
Query: 187 VKGVCTEAGMYALRERRVHV-TQETLKWLSLK--PCRRTLKRICPS 315
++ +C EA M +RE ++ T + K SL+ R+++ I PS
Sbjct: 423 LQALCEEAAMMPIRELGANILTIQANKVRSLRYDDFRKSMAVIRPS 468
>At2g46620.1 68415.m05815 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 491
Score = 32.3 bits (70), Expect = 0.12
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +1
Query: 13 LDPALLRPGRIDRKIEFP 66
+DPA+LRPGR+D I FP
Sbjct: 335 IDPAMLRPGRVDVHIHFP 352
>At2g18330.1 68415.m02136 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family associated with
various cellular activities (AAA)
Length = 636
Score = 32.3 bits (70), Expect = 0.12
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +1
Query: 40 RIDRKIEFPPPNEEARLDILKIHSRK 117
RID IEFP P EE R +LK++ K
Sbjct: 506 RIDEVIEFPLPGEEERFKLLKLYLNK 531
>At5g40010.1 68418.m04852 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 514
Score = 30.7 bits (66), Expect = 0.38
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +1
Query: 4 IDILDPALLRPGRIDRKIE 60
ID LDPAL+R GR+D+ IE
Sbjct: 374 IDKLDPALIRKGRMDKHIE 392
>At4g36580.1 68417.m05193 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 620
Score = 30.3 bits (65), Expect = 0.50
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 40 RIDRKIEFPPPNEEARLDILKIHSRK 117
RID IEFP P EE R +L ++ K
Sbjct: 491 RIDEVIEFPLPGEEERFKLLNLYLNK 516
>At3g28580.1 68416.m03568 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 500
Score = 30.3 bits (65), Expect = 0.50
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +1
Query: 4 IDILDPALLRPGRIDRKIE 60
+D LDPAL+R GR+D+ IE
Sbjct: 372 VDKLDPALIRKGRMDKHIE 390
>At5g17760.1 68418.m02082 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 505
Score = 29.9 bits (64), Expect = 0.66
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = +1
Query: 7 DILDPALLRPGRIDRKI 57
D LDPALLRPGR+D I
Sbjct: 369 DRLDPALLRPGRMDMHI 385
>At5g16930.1 68418.m01984 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 644
Score = 29.9 bits (64), Expect = 0.66
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 40 RIDRKIEFPPPNEEARLDILKIHSRK 117
RID +EFP P EE R +L ++ K
Sbjct: 519 RIDETLEFPLPGEEERFKLLNLYLEK 544
>At3g04340.1 68416.m00459 FtsH protease family protein similar to
chloroplast FtsH protease [Arabidopsis thaliana]
GI:1483215; contains Pfam profiles PF01434: Peptidase
family M41, PF00004: ATPase AAA family
Length = 960
Score = 29.9 bits (64), Expect = 0.66
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Frame = +1
Query: 13 LDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRK---MNLTRGINLRKIAELMPGASGA 183
+D AL RPGR+DR P E R IL + + L ++ RK++E
Sbjct: 576 IDEALRRPGRMDRVFHLQSPTEMERERILHNAAEETMDRELVDLVDWRKVSEKTTLLRPI 635
Query: 184 EVKGVCTEAGMYALRERRVHVTQETLKWLS 273
E+K V A R + + T E L ++S
Sbjct: 636 ELKLVPMALESSAFRSKFLD-TDELLSYVS 664
>At3g28510.1 68416.m03561 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 530
Score = 29.1 bits (62), Expect = 1.2
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +1
Query: 4 IDILDPALLRPGRIDRKIE 60
+D LDPAL+R GR+D IE
Sbjct: 373 VDKLDPALIRRGRMDNHIE 391
>At3g03060.1 68416.m00302 AAA-type ATPase family protein contains a
ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
Length = 639
Score = 29.1 bits (62), Expect = 1.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 40 RIDRKIEFPPPNEEARLDILKIHSRK 117
R+D +EFP P EE R +L ++ K
Sbjct: 518 RVDEVLEFPLPGEEERFKLLNLYLEK 543
>At5g42580.1 68418.m05184 cytochrome P450 family protein similar to
Cytochrome P450 93A1 (SP:Q42798) {Glycine max}; similar
to flavone synthase II (GI:5081817) [Gerbera hybrida].
Length = 499
Score = 28.7 bits (61), Expect = 1.5
Identities = 19/80 (23%), Positives = 37/80 (46%)
Frame = +1
Query: 157 ELMPGASGAEVKGVCTEAGMYALRERRVHVTQETLKWLSLKPCRRTLKRICPSRNFGSDQ 336
EL G E++ C + A ++ V + + LK + CR ++ R C +N +++
Sbjct: 150 ELSKGNRAEELRRFCLDLQGKARKKESVEIGKVALKLTNNIICRMSMGRSCSEKNGVAER 209
Query: 337 ILYLNFRLCIRINKIFFSHI 396
L + K+FFS++
Sbjct: 210 ARELVNKSFALSVKLFFSNM 229
>At5g17740.1 68418.m02080 AAA-type ATPase family protein h-bcs1,
Homo sapiens, EMBL:AF026849 h-bcs1, Homo sapiens,
EMBL:AF026849 h-bcs1, Homo sapiens, EMBL:AF026849
contains Pfam profile: ATPase family PF00004
gene_id:K17E7.100 contains Pfam profile: ATPase family
PF00004
Length = 533
Score = 28.7 bits (61), Expect = 1.5
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +1
Query: 13 LDPALLRPGRIDRKI 57
LDPALLRPGR+D I
Sbjct: 366 LDPALLRPGRMDMHI 380
>At5g17730.1 68418.m02079 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 470
Score = 28.7 bits (61), Expect = 1.5
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +1
Query: 13 LDPALLRPGRIDRKI 57
LDPALLRPGR+D I
Sbjct: 361 LDPALLRPGRMDMHI 375
>At3g50940.1 68416.m05577 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 451
Score = 28.7 bits (61), Expect = 1.5
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +1
Query: 13 LDPALLRPGRIDRKI 57
LDPALLRPGR+D I
Sbjct: 362 LDPALLRPGRMDMHI 376
>At3g28540.1 68416.m03564 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 510
Score = 28.7 bits (61), Expect = 1.5
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +1
Query: 4 IDILDPALLRPGRIDRKIE 60
+D LDPAL+R GR+D IE
Sbjct: 372 LDKLDPALIRRGRMDNHIE 390
>At2g18190.1 68415.m02116 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 494
Score = 28.7 bits (61), Expect = 1.5
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +1
Query: 13 LDPALLRPGRIDRKI 57
LDPALLRPGR+D I
Sbjct: 362 LDPALLRPGRMDMHI 376
>At3g28520.1 68416.m03562 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 478
Score = 28.3 bits (60), Expect = 2.0
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +1
Query: 4 IDILDPALLRPGRIDRKIE 60
+D LDPAL+R GR+D IE
Sbjct: 357 VDNLDPALIRRGRMDYHIE 375
>At4g05380.1 68417.m00820 AAA-type ATPase family protein contains
similarity to mitochondrial ATPase (AAA family) Bcs1p,
Saccharomyces cerevisiae, Swiss Prot:P32839
Length = 248
Score = 27.9 bits (59), Expect = 2.7
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +1
Query: 13 LDPALLRPGRID 48
LDPALLRPGR+D
Sbjct: 156 LDPALLRPGRMD 167
>At2g18193.1 68415.m02117 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 495
Score = 27.9 bits (59), Expect = 2.7
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +1
Query: 13 LDPALLRPGRID 48
LDPALLRPGR+D
Sbjct: 358 LDPALLRPGRMD 369
>At1g43910.1 68414.m05066 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 475
Score = 27.9 bits (59), Expect = 2.7
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +1
Query: 13 LDPALLRPGRID 48
LDPALLRPGR+D
Sbjct: 368 LDPALLRPGRMD 379
>At5g17750.1 68418.m02081 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 392
Score = 27.5 bits (58), Expect = 3.5
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +1
Query: 7 DILDPALLRPGRIDRKI 57
++LDPALLRPG +D I
Sbjct: 336 EVLDPALLRPGCMDMHI 352
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 27.5 bits (58), Expect = 3.5
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +1
Query: 37 GRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGV 198
G + + EFP P+EEA+L + NL +N + +A L A E+ V
Sbjct: 135 GAVSERAEFPEPSEEAKLFV-------GNLAYDVNSQALAMLFEQAGTVEIAEV 181
>At5g15850.1 68418.m01854 zinc finger protein CONSTANS-LIKE 1 (COL1)
identical to Zinc finger protein CONSTANS-LIKE 1
SP:O50055 from [Arabidopsis thaliana]
Length = 355
Score = 27.1 bits (57), Expect = 4.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 102 NSLEKNESDSRNQFT*DCRVDARSFG 179
+S +K +D NQ+ DC V RS+G
Sbjct: 170 SSSDKQFTDQSNQYQLDCNVPQRSYG 195
>At4g27430.1 68417.m03942 COP1-interacting protein 7 (CIP7)
identical to COP1-Interacting Protein 7 (CIP7)
GI:3327868 from [Arabidopsis thaliana]
Length = 1058
Score = 27.1 bits (57), Expect = 4.7
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 99 EDVQTGLLIWRRELNFSINTTGSEQSRV 16
+DV+ LL W E++F NT SR+
Sbjct: 671 QDVKPTLLPWTPEIDFETNTLAQRTSRI 698
>At4g05340.1 68417.m00816 hypothetical protein
Length = 96
Score = 27.1 bits (57), Expect = 4.7
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +1
Query: 13 LDPALLRPGRIDRKI--EFPPPNEEARLDILKIHSRK 117
LDPA LRPG++D I ++ P +LD L + R+
Sbjct: 59 LDPAFLRPGKMDVHILMDYCTPVVFKKLDALYLDIRR 95
>At2g30970.1 68415.m03777 aspartate aminotransferase, mitochondrial
/ transaminase A (ASP1) identical to SP|P46643 Aspartate
aminotransferase, mitochondrial precursor (EC 2.6.1.1)
(Transaminase A) {Arabidopsis thaliana}
Length = 430
Score = 27.1 bits (57), Expect = 4.7
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 14 LTLLCSDPVVLIEKLSSLRQMRRPVWTS 97
L++LC DP + S L+Q+ RP++++
Sbjct: 289 LSVLCEDPKQAVAVKSQLQQLARPMYSN 316
>At1g55590.1 68414.m06363 F-box family protein ; similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 607
Score = 27.1 bits (57), Expect = 4.7
Identities = 22/54 (40%), Positives = 30/54 (55%)
Frame = +1
Query: 142 LRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQETLKWLSLKPCRRTLKR 303
LRK+ L +GA+V T++GM AL + V +TQ LSL+ CRR R
Sbjct: 412 LRKLTSL--NLAGADV----TDSGMLALGKSDVPITQ-----LSLRGCRRVSDR 454
>At5g57480.1 68418.m07183 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 520
Score = 26.6 bits (56), Expect = 6.2
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +1
Query: 4 IDILDPALLRPGRIDRKI 57
I+ LDPALLR GR+D I
Sbjct: 374 IEKLDPALLRSGRMDMHI 391
>At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1
nuclear gene encoding mitochondrial protein - Homo
sapiens, EMBL:AF026849 contains Pfam profile: ATPase
family PF00004
Length = 470
Score = 26.6 bits (56), Expect = 6.2
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +1
Query: 4 IDILDPALLRPGRIDRKIE 60
++ LDPAL+R GR+D IE
Sbjct: 361 LEKLDPALIRRGRMDMHIE 379
>At4g25835.1 68417.m03716 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 506
Score = 26.6 bits (56), Expect = 6.2
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +1
Query: 4 IDILDPALLRPGRIDRKI 57
I+ LDPALLR GR+D I
Sbjct: 365 IEKLDPALLRSGRMDMHI 382
>At4g01090.1 68417.m00147 extra-large G-protein-related contains
weak similarity to extra-large G-protein [Arabidopsis
thaliana] gi|3201682|gb|AAC19353
Length = 714
Score = 26.6 bits (56), Expect = 6.2
Identities = 17/74 (22%), Positives = 36/74 (48%)
Frame = +1
Query: 43 IDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYA 222
+DRK+ F NEE + L++ R T I +++ + +SG ++ E +
Sbjct: 359 VDRKLVFSSGNEETKPVSLEVEDRNTTNTVVIE-EEVSSVDFNSSGRDIPRKDEEEPVQE 417
Query: 223 LRERRVHVTQETLK 264
LR + +T ++++
Sbjct: 418 LRNHQDTITTQSVR 431
>At3g48820.2 68416.m05332 glycosyl transferase family 29 protein /
sialyltransferase family protein contains Pfam profile:
PF00777 sialyltransferase (Glycosyltransferase family
29)
Length = 431
Score = 26.6 bits (56), Expect = 6.2
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +1
Query: 43 IDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGAS-GAEVKGVCTEAGMY 219
+D+ +E +E L IH + R + ++ LM GAS G+ KG +A +
Sbjct: 222 LDKVVELDEKKQEVLLVKTTIHDIMNKMIREVPIKNPVYLMLGASFGSAAKGTGLKALEF 281
Query: 220 AL 225
AL
Sbjct: 282 AL 283
>At3g48820.1 68416.m05331 glycosyl transferase family 29 protein /
sialyltransferase family protein contains Pfam profile:
PF00777 sialyltransferase (Glycosyltransferase family
29)
Length = 440
Score = 26.6 bits (56), Expect = 6.2
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +1
Query: 43 IDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGAS-GAEVKGVCTEAGMY 219
+D+ +E +E L IH + R + ++ LM GAS G+ KG +A +
Sbjct: 231 LDKVVELDEKKQEVLLVKTTIHDIMNKMIREVPIKNPVYLMLGASFGSAAKGTGLKALEF 290
Query: 220 AL 225
AL
Sbjct: 291 AL 292
>At3g28610.1 68416.m03571 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 473
Score = 26.2 bits (55), Expect = 8.2
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +1
Query: 13 LDPALLRPGRIDRKIE 60
LDPAL+R GR+D IE
Sbjct: 363 LDPALIRRGRMDMHIE 378
>At3g28600.1 68416.m03570 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 475
Score = 26.2 bits (55), Expect = 8.2
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +1
Query: 13 LDPALLRPGRIDRKIE 60
LDPAL+R GR+D IE
Sbjct: 362 LDPALIRRGRMDMHIE 377
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,640,928
Number of Sequences: 28952
Number of extensions: 161207
Number of successful extensions: 520
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 585758608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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