Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0322
         (712 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit T...    28   1.5  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    26   4.6  
SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual        23   6.8  

>SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit
           Tfb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 477

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +1

Query: 445 RVFLLICSDGELPFKAAVYLTEPPQARTHCDQ-QRKLQGTVQ 567
           RVF+++  +GE P     + T  P AR +CD    +L+  +Q
Sbjct: 3   RVFIVV-KEGEDPTSLVFHFTGTPNARENCDMITNELRNAIQ 43


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
            Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
 Frame = +2

Query: 206  QLLPVSMENSTILHT-----VDYRWIFPSQ*AR*NILCSLCC*PSRIL*GELRQGCEHRT 370
            + LP+ ME  + L+      +D++ ++PS     N+  S C  P +I+ G+++ G    +
Sbjct: 934  EALPLVMEPKSDLYNNPVVVLDFQSLYPSIIIAYNLCYSTCLGPVKIVNGKVKLGFMFHS 993

Query: 371  SN 376
            SN
Sbjct: 994  SN 995


>SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 23.0 bits (47), Expect(2) = 6.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 379 CVTRTMLTSLS*FSSENSGWL 317
           CV R ++  ++ FSS  S WL
Sbjct: 8   CVQRRLVREINKFSSFESNWL 28



 Score = 21.0 bits (42), Expect(2) = 6.8
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -1

Query: 268 DPAIIDGMQDRRILHGNR*QLKGSGSW*EQYQRTVGTIDS 149
           +PA +  ++ RR    +   +KGS +  +QY+R     D+
Sbjct: 68  EPANVYSIEQRRSHDDDLPTIKGSDASTQQYERKTYITDA 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,130,267
Number of Sequences: 5004
Number of extensions: 69240
Number of successful extensions: 210
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)