Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0322
         (712 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43527| Best HMM Match : Trypsin (HMM E-Value=0)                     30   2.1  
SB_26948| Best HMM Match : LIM (HMM E-Value=2.3e-39)                   29   2.8  
SB_11584| Best HMM Match : Peptidase_M28 (HMM E-Value=6.1e-11)         29   3.7  
SB_58219| Best HMM Match : SOCS_box (HMM E-Value=2e-07)                28   6.5  
SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_48258| Best HMM Match : Kelch_1 (HMM E-Value=0)                     28   8.6  

>SB_43527| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 366

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +3

Query: 321 HPEFSEENYDKDVSIVRVTHAIHF 392
           HP +S ++YD D++++R+   + F
Sbjct: 199 HPHYSPDSYDSDIALIRLAQPVTF 222



 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = +2

Query: 473 GNYRSRRQCI*RNLHKLELIVTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTDL 652
           G  +  R  +   LH+  + + + + CR+ +   D +VT N FCAG   +   D    D 
Sbjct: 253 GKRKLWRDRVANRLHEATVPIVDIQTCRKAHP--DYIVTANMFCAGFENSSRGDACQGDS 310

Query: 653 G 655
           G
Sbjct: 311 G 311


>SB_26948| Best HMM Match : LIM (HMM E-Value=2.3e-39)
          Length = 351

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -3

Query: 683 LLAHFEEAGHPSQYCRSRGHQPGPNRRRICYQSRRDHDPCTV 558
           L+ H     +PS+ C +      P  +++ YQS+  HD C +
Sbjct: 162 LICHGCRGINPSKVCAACNGDFAPGEKKVGYQSKTFHDKCFI 203


>SB_11584| Best HMM Match : Peptidase_M28 (HMM E-Value=6.1e-11)
          Length = 531

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -3

Query: 317 NSKVNIRYFTGLTATGRSSDNRRYAGS*NSPWKQVAVER 201
           N +  +RYFT +  +  S++N + A      W+Q  VER
Sbjct: 67  NIREQLRYFTRIPHSTASAENHQLAEYIQDKWQQYGVER 105


>SB_58219| Best HMM Match : SOCS_box (HMM E-Value=2e-07)
          Length = 507

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = -3

Query: 683 LLAHFEEAGHPSQYCRSRGHQPGPNRRRICYQSR 582
           L+ H  EA      C SRGH    NR  ICY  R
Sbjct: 416 LIMHAMEASQDGILCNSRGH----NRNTICYPVR 445


>SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1465

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +2

Query: 533  VTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTDLG 655
            V N   C++ Y+     VT N  CAG  +   RD  N D G
Sbjct: 1321 VVNHNACKKAYENETWPVTSNMLCAG-YKNKSRDSCNRDSG 1360


>SB_48258| Best HMM Match : Kelch_1 (HMM E-Value=0)
          Length = 473

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 115 SLVQIEVFLPILNQWFQQCAGIVLTNYHYLSTATCFHGEFY 237
           +LV +E + P  N+W ++    +LT   Y STA    G+ Y
Sbjct: 111 NLVSMERYDPSTNEWEEEAVAPMLTARKYFSTAV-LDGKLY 150


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,432,449
Number of Sequences: 59808
Number of extensions: 575911
Number of successful extensions: 1455
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1454
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)