Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0322
         (712 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical pr...    32   0.47 
U80837-5|AAB37901.1|  455|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    31   1.1  
Z70681-1|CAA94580.1|  307|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z83238-2|CAB05793.1|  343|Caenorhabditis elegans Hypothetical pr...    30   1.9  
U97593-6|AAB52879.2|  925|Caenorhabditis elegans Prion-like-(q/n...    29   3.3  
U97593-5|AAB52880.1| 1175|Caenorhabditis elegans Prion-like-(q/n...    29   3.3  
AF077537-12|AAC26281.1|  346|Caenorhabditis elegans Hypothetical...    29   3.3  
U97550-1|AAK18983.2| 1065|Caenorhabditis elegans Hypothetical pr...    28   5.7  

>Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical
           protein M195.2 protein.
          Length = 419

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 356 CEHRTSNTCHPLRPKHPAGCYYPTRCRNTPGYFC 457
           C+   +N+C  L P+   GC  PT CRNT    C
Sbjct: 275 CQTGCANSCAQLSPQPTEGC--PTNCRNTCNEVC 306


>U80837-5|AAB37901.1|  455|Caenorhabditis elegans Hypothetical
           protein F07E5.1 protein.
          Length = 455

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/41 (41%), Positives = 25/41 (60%)
 Frame = +2

Query: 134 YSYPS*INGSNSALVLFSPTTTTFQLLPVSMENSTILHTVD 256
           YSYPS I   +S +V+ + TTTTF LL +  +   ++ T D
Sbjct: 75  YSYPSPIVLEHSFVVMTTTTTTTFSLLQLPTKALKMVLTQD 115


>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
            lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = +2

Query: 356  CEHRTS--NT-CHPLRPKHPAGCYYPTRCRNTPGY 451
            CE   +  NT C P+  K P  C+   RC +TPGY
Sbjct: 1863 CEQNAAAHNTDCSPICQKQPNWCHNGGRCLDTPGY 1897


>Z70681-1|CAA94580.1|  307|Caenorhabditis elegans Hypothetical
           protein C30F2.1 protein.
          Length = 307

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +2

Query: 380 CHPLRPKHPAGCYYPTRCRNTPG 448
           C P+RPK P G   P  CR  PG
Sbjct: 102 CEPIRPKCPPGPPGPPGCRGEPG 124


>Z83238-2|CAB05793.1|  343|Caenorhabditis elegans Hypothetical
           protein T08G3.2 protein.
          Length = 343

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 21/77 (27%), Positives = 34/77 (44%)
 Frame = +1

Query: 115 SLVQIEVFLPILNQWFQQCAGIVLTNYHYLSTATCFHGEFYDPAYRRLSLDLPVAVSPVK 294
           S V + ++LP+LN  F    GI L  +        F   +    YRR   D+   ++P K
Sbjct: 266 SPVFLVIYLPLLNLDFSLPMGIFLGIFSLYPALDAFILMYVVTDYRRALKDVLKVLNPFK 325

Query: 295 YLMFTLLLTIPNSLRRI 345
            +  + L+ IP   + I
Sbjct: 326 KVTVSTLVVIPGQAQFI 342


>U97593-6|AAB52879.2|  925|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
           isoform c protein.
          Length = 925

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = -3

Query: 659 GHPSQYCRSRGHQPGPNRRRICYQSRRDHDPCTV 558
           GH       RGH P P R R  Y +   HDPC V
Sbjct: 222 GHVPGDANYRGHGPDPPRLRPKY-TADSHDPCNV 254


>U97593-5|AAB52880.1| 1175|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
           isoform a protein.
          Length = 1175

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = -3

Query: 659 GHPSQYCRSRGHQPGPNRRRICYQSRRDHDPCTV 558
           GH       RGH P P R R  Y +   HDPC V
Sbjct: 341 GHVPGDANYRGHGPDPPRLRPKY-TADSHDPCNV 373


>AF077537-12|AAC26281.1|  346|Caenorhabditis elegans Hypothetical
           protein F16G10.14 protein.
          Length = 346

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +3

Query: 246 IPSIIAGSSRRSEPGEISYVHFAVNHPEFSEENYDKDVSIV 368
           IPS +A       PGEI+    +V+ PE SEE    +V+++
Sbjct: 31  IPSTLAPEESTLAPGEITMAPGSVSTPETSEETEAPEVTMM 71


>U97550-1|AAK18983.2| 1065|Caenorhabditis elegans Hypothetical protein
            T20F7.5 protein.
          Length = 1065

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 20/62 (32%), Positives = 31/62 (50%)
 Frame = -2

Query: 225  METGSS*KVVVVGENNTSALLEPLIQDG*EYFNLDQAGMLANRHRSTEIASSAAADGSEH 46
            +E  SS  V    E+     +EP++++  +Y +LD   M + RHRS +I S    D   H
Sbjct: 907  LERKSSSTVPEKNEDELRVEIEPIMKELSDYESLD---MRSIRHRSDKIDSYFDLDSEFH 963

Query: 45   SY 40
             Y
Sbjct: 964  DY 965


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,627,587
Number of Sequences: 27780
Number of extensions: 404968
Number of successful extensions: 1089
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1088
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)