Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0320
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit...    26   4.7  
SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase Uch1|Schizosa...    26   4.7  
SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces...    26   6.2  
SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce...    25   8.2  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    25   8.2  
SPCC16C4.17 |mug123||meiotically upregulated gene Mug123|Schizos...    25   8.2  

>SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit
           Rrn7 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 293 VEENKENGVGKDDENLFPLVVKDKSL 370
           VEEN  N + +   N+FP++ KD  L
Sbjct: 416 VEENNPNNIPEGILNVFPILSKDSHL 441


>SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase
           Uch1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/55 (21%), Positives = 23/55 (41%)
 Frame = +2

Query: 20  VQVLHGKNSGLDVEQQNDSVSFITVILFVCFDVSVGRAEESAHGRGGRSQAPFDH 184
           ++ LH   +G  +E +       T + F+CF     + +   +   GR + P  H
Sbjct: 132 LEALHAAFAGPPLEVEGSEEDVETDLHFICFVKGKSKDDNHFYELDGRQEGPVQH 186


>SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 350

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 653 DTNIDTKNCSTKQYIDNRKTIKATLSNILKR 561
           D+N    N STK  I+ RK    T+S++L +
Sbjct: 204 DSNFAFHNSSTKTTINRRKKAIGTISSLLSK 234


>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 342

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 281 GNNPVEENKENGVGKDDENLFPLVVKDKSL 370
           G  P  E  E G GK+ ++LFP+    + L
Sbjct: 17  GERPTNEVYEYGKGKNVQHLFPITPMQRPL 46


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 633 LCIDISIEPQPSISLNDIFVILHDWSLK 716
           LC+DI + PQ   +  D+++I   W+L+
Sbjct: 830 LCLDIVLTPQNIKTSTDVYII-QTWALR 856


>SPCC16C4.17 |mug123||meiotically upregulated gene
           Mug123|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 235

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 632 NCSTKQYIDNRKTIKATLSNILKRAALTHNSSSI 531
           N ST  Y+ + +  KAT+ + + R A  H+S SI
Sbjct: 32  NGSTFSYVQSLRRAKATVWSDIGRVAPLHSSPSI 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,691,593
Number of Sequences: 5004
Number of extensions: 49599
Number of successful extensions: 157
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)