Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0320
         (721 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0338 + 22479804-22480651,22480764-22482954                       28   8.6  
06_03_0805 + 24775346-24775543,24775643-24775858,24775930-247759...    28   8.6  
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742...    28   8.6  

>11_06_0338 + 22479804-22480651,22480764-22482954
          Length = 1012

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 641  DTKNCSTKQYIDNRKTIKATLSNILKRAALTHNSSSIFI 525
            + K C   +YI N   +K T+  + K  A  HNS  +FI
Sbjct: 916  EAKICYNARYI-NSPNVKRTVEVVSKEVAKHHNSIDLFI 953


>06_03_0805 +
           24775346-24775543,24775643-24775858,24775930-24775970,
           24776510-24776551,24777019-24777055,24779796-24780092
          Length = 276

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 472 YCSTGCYLFCIHLDVC 425
           +CS GC L  +HLD+C
Sbjct: 132 FCSLGCKLATLHLDLC 147


>01_06_1406 -
           37073548-37073822,37073892-37074111,37074200-37074246,
           37074404-37074576,37075161-37075238,37075751-37075813,
           37075889-37075961,37076150-37076189,37076302-37076368,
           37076719-37078472,37079128-37079230,37080041-37080078,
           37080221-37080347,37081944-37082152
          Length = 1088

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 133 CPANANVETNKQNDSNERNTIVLLFNIQ 50
           CP    V+  K++ SNER+++VL    Q
Sbjct: 592 CPGKGRVQDKKKSVSNERSSVVLSVEAQ 619


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,540,723
Number of Sequences: 37544
Number of extensions: 287845
Number of successful extensions: 684
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)