Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0320
         (721 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50057| Best HMM Match : NACHT (HMM E-Value=1.4e-08)                 32   0.41 
SB_40986| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_49461| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_42540| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_44877| Best HMM Match : GSHPx (HMM E-Value=2.9)                     29   3.8  
SB_3278| Best HMM Match : ORC2 (HMM E-Value=0)                         29   5.0  

>SB_50057| Best HMM Match : NACHT (HMM E-Value=1.4e-08)
          Length = 1555

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -1

Query: 193  TEDVVKRCLRSSTSAVSRFLCPANANVETNKQNDSNERNTIV 68
            T  + K  + ++T+A+SR++   N N+  NK  D N  N+ V
Sbjct: 1235 TFTITKTPITTTTTALSRYVNNNNNNIHHNKNTDDNNNNSFV 1276



 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -1

Query: 184  VVKRCLRSSTSAVSRFLCPANANVETNKQNDSNERNTIV 68
            + K  + + T+A+SR++   N ++  NK  D N  N+ V
Sbjct: 1516 ITKTPMTTITTALSRYVNNNNNDIHHNKNTDDNNNNSFV 1554


>SB_40986| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -1

Query: 178 KRCLRSSTSAVSRFLCPANANVETNKQNDSNERNTIV 68
           K  + ++T+A+SR++   N N+  NK  D N  N+ V
Sbjct: 23  KTPMTTTTTALSRYVNNNNNNIHHNKNTDDNNNNSFV 59


>SB_49461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 257

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -1

Query: 169 LRSSTSAVSRFLCPANANVETNKQNDSNERNTIV 68
           + ++T+A+SR++   N N+  NK  D N  N+ V
Sbjct: 1   MTTTTTALSRYVNNNNNNIHHNKNTDDNNNNSFV 34


>SB_42540| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1471

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -1

Query: 184 VVKRCLRSSTSAVSRFLCPANANVETNKQNDSNERNTIV 68
           + K  + ++T+A+SR++   N ++  NK  D N  N+ V
Sbjct: 145 ITKTPMTTTTTALSRYVNNNNNDIHHNKNTDDNNNNSFV 183


>SB_44877| Best HMM Match : GSHPx (HMM E-Value=2.9)
          Length = 326

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = +1

Query: 472 ITN*YVTYDMFMVLNYEHIKMLDELCVNAARFKMFDNVALIVFLLSMYCLVEQFFVSILV 651
           + N  + Y +   L  E     +E    A +  +  N+ + VFL+ +  LV  FFV  + 
Sbjct: 21  LNNEQINYAILKSLGGESSAATEEKPPKAKKRGLCLNICIAVFLI-LVLLVSTFFVVSVA 79

Query: 652 SSHNQAY 672
           +SHN+ +
Sbjct: 80  ASHNKEF 86


>SB_3278| Best HMM Match : ORC2 (HMM E-Value=0)
          Length = 459

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +2

Query: 260 TEPPVSEGNNPVEENKENGVGKDDENLFPLVVKDKSL 370
           TE    +GN+  ++NKE   GKDDE+    ++  K+L
Sbjct: 76  TEDDTDDGND--DDNKEGSSGKDDESENEKIIVPKAL 110


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,851,455
Number of Sequences: 59808
Number of extensions: 359897
Number of successful extensions: 877
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)